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Protein

Ribosomal RNA small subunit methyltransferase J

Gene

yhiQ

Organism
Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) (Xenorhabdus luminescens (strain 2))
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Specifically methylates the guanosine in position 1516 of 16S rRNA.UniRule annotationSAAS annotation

Catalytic activityi

S-adenosyl-L-methionine + guanine(1516) in 16S rRNA = S-adenosyl-L-homocysteine + N(2)-methylguanine(1516) in 16S rRNA.UniRule annotationSAAS annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei171 – 1711S-adenosyl-L-methionineUniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseUniRule annotationSAAS annotation, Transferase

Keywords - Biological processi

rRNA processingUniRule annotationSAAS annotation

Keywords - Ligandi

S-adenosyl-L-methionineUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciPASY291112:GJQ0-113-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase JUniRule annotationSAAS annotation (EC:2.1.1.242UniRule annotationSAAS annotation)
Alternative name(s):
16S rRNA m2G1516 methyltransferaseUniRule annotation
rRNA (guanine-N(2)-)-methyltransferaseUniRule annotation
Gene namesi
Name:yhiQImported
Synonyms:rsmJUniRule annotation
Ordered Locus Names:PAU_00107Imported
OrganismiPhotorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) (Xenorhabdus luminescens (strain 2))Imported
Taxonomic identifieri553480 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePhotorhabdus
ProteomesiUP000002747 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi553480.PAU_00107.

Structurei

3D structure databases

ProteinModelPortaliC7BU50.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni101 – 1022S-adenosyl-L-methionine bindingUniRule annotation
Regioni117 – 1182S-adenosyl-L-methionine bindingUniRule annotation
Regioni153 – 1542S-adenosyl-L-methionine bindingUniRule annotation

Sequence similaritiesi

Belongs to the methyltransferase superfamily. RsmJ family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000218236.
KOiK15984.
OMAiSSRYDIY.
OrthoDBiEOG657J92.

Family and domain databases

Gene3Di3.40.50.150. 1 hit.
HAMAPiMF_01523. 16SrRNA_methyltr_J.
InterProiIPR007536. 16SrRNA_methylTrfase_J.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF04445. SAM_MT. 1 hit.
[Graphical view]
SUPFAMiSSF53335. SSF53335. 1 hit.

Sequencei

Sequence statusi: Complete.

C7BU50-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDICLICEQG ADSSALSQLA KRWHLIHDES AVMALVLTPQ HLELRKLDEP
60 70 80 90 100
KLGGIYVDFV SGVMAHRRRF GGGRGEAVAK AVGIKKDYLP TVVDATAGLG
110 120 130 140 150
RDAFVLASLG CHVRMLERHP VVAALLDDGL QRGYQDAEIG GWLQERMTLL
160 170 180 190 200
HASSITALVD ITPQPDVVYL DPMYPHKQKS ALVKKEMRVF QSLVGADEDA
210 220 230 240
NHLLAPARAL AKRRVVVKRP DYAEPLAGVA ASAAITTKNH RFDIYPC
Length:247
Mass (Da):27,021
Last modified:September 22, 2009 - v1
Checksum:i67E7FBDCCBCAD5AD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM162591 Genomic DNA. Translation: CAQ82200.1.
RefSeqiYP_003038946.1. NC_012962.1.

Genome annotation databases

EnsemblBacteriaiCAQ82200; CAQ82200; PAU_00107.
KEGGipay:PAU_00107.
PATRICi20493678. VBIPhoAsy71438_0133.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM162591 Genomic DNA. Translation: CAQ82200.1.
RefSeqiYP_003038946.1. NC_012962.1.

3D structure databases

ProteinModelPortaliC7BU50.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi553480.PAU_00107.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAQ82200; CAQ82200; PAU_00107.
KEGGipay:PAU_00107.
PATRICi20493678. VBIPhoAsy71438_0133.

Phylogenomic databases

HOGENOMiHOG000218236.
KOiK15984.
OMAiSSRYDIY.
OrthoDBiEOG657J92.

Enzyme and pathway databases

BioCyciPASY291112:GJQ0-113-MONOMER.

Family and domain databases

Gene3Di3.40.50.150. 1 hit.
HAMAPiMF_01523. 16SrRNA_methyltr_J.
InterProiIPR007536. 16SrRNA_methylTrfase_J.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF04445. SAM_MT. 1 hit.
[Graphical view]
SUPFAMiSSF53335. SSF53335. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43949 / 3105-77Imported.

Entry informationi

Entry nameiC7BU50_PHOAA
AccessioniPrimary (citable) accession number: C7BU50
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: June 24, 2015
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.