C6Y121 (C6Y121_PEDHD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ribulose-bisphosphate carboxylase EMBL ACU04948.1
EC=4.1.1.39 EMBL ACU04948.1

Gene names

Ordered Locus Names:

Phep_2747

Organism

Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) [Complete proteome] [HAMAP]

Taxonomic identifier

485917 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Sphingobacteriia › Sphingobacteriales › Sphingobacteriaceae › Pedobacter › Pedobacter heparinus

Protein attributes

Sequence length	416 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
Molecular function	Lyase EMBL ACU04948.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carbon fixation Inferred from electronic annotation. Source: InterPro
Molecular_function	magnesium ion binding Inferred from electronic annotation. Source: InterPro ribulose-bisphosphate carboxylase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6Y121 [UniParc]. Last modified September 22, 2009. Version 1. Checksum: A020F12581DA133D	FASTA	416	44,985
	10 20 30 40 50 60 MERITAKYYI ETPLDLEKSA QLLAGEQSSG TFIAVPGETE ELKQRFAARV ESITPMDTAN 70 80 90 100 110 120 EPAIPGVLSA GGKYQRAMIE VSWSIENFGY NLPVMVSTLQ GNLYELTQFT GLKLMDLELP 130 140 150 160 170 180 ASFATAFKGP KFGIAGCRKL TGVYNRPLIG TIIKPSIGMT PEQTAALVNT LALAGIDFIK 190 200 210 220 230 240 DDELLGSSAN SPFDKRVDAI MEVINRHADR SGKKVMYAFN ISDDIDQMQR NYEKILRSGG 250 260 270 280 290 300 TSAMISLNSV GLAGVKKIGE IGELAIHGHR NGWGMLNRHP LLGIEFPAYQ QLWRLAGVDQ 310 320 330 340 350 360 IHVNGIQNKF WESDDSVVRS IEACFKPLLG GYSVLPVVSS GQWGGQAVET YRRVPSVDLL 370 380 390 400 410 YMAGGGIMAH PDGPAGGVVA LQQAWQGAVD GLSVAETAAK YPEFGHSVSV FGKKQA

References

[1]

"Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3)." Han C., Spring S., Lapidus A., Glavina del Rio T., Tice H., Copeland A., Cheng J.-F., Lucas S., Chen F., Nolan M., Bruce D., Goodwin L., Pitluck S., Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A. , Palaniappan K., Land M., Hauser L., Chang Y.-J., Jeffries C.C., Saunders E., Chertkov O., Brettin T., Goeker M., Rohde M., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N., Klenk H.-P., Detter J.C. Stand. Genomic Sci. 1:54-62(2009) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 13125 / DSM 2366 / NCIB 9290.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001681 Genomic DNA. Translation: ACU04948.1.
RefSeq	YP_003093010.1. NC_013061.1.
3D structure databases
ProteinModelPortal	C6Y121.
ModBase	Search...
Protein-protein interaction databases
STRING	485917.Phep_2747.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACU04948; ACU04948; Phep_2747.
GeneID	8253855.
KEGG	phe:Phep_2747.
PATRIC	22882599. VBIPedHep98714_2775.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1850.
HOGENOM	HOG000230831.
KO	K01601.
OMA	HRNGWDV.
ProtClustDB	CLSK2546562.
Enzyme and pathway databases
BioCyc	PHEP485917:GHL9-2772-MONOMER.
Family and domain databases
Gene3D	3.20.20.110. 1 hit. 3.30.70.150. 1 hit.
InterPro	IPR020878. RuBisCo_large_chain_AS. IPR000685. RuBisCO_lsu_C. IPR017443. RuBisCO_lsu_fd_N. [Graphical view]
Pfam	PF00016. RuBisCO_large. 1 hit. [Graphical view]
SUPFAM	SSF51649. RuBisCO_large. 1 hit. SSF54966. RuBisCO_large. 1 hit.
PROSITE	PS00157. RUBISCO_LARGE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6Y121_PEDHD

Accession

Primary (citable) accession number: C6Y121

Entry history

Integrated into UniProtKB/TrEMBL:	September 22, 2009
Last sequence update:	September 22, 2009
Last modified:	May 29, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)