Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

C6Y054

- C6Y054_PEDHD

UniProt

C6Y054 - C6Y054_PEDHD

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Phep_2562

Organism
Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPHEP485917:GHL9-2586-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Phep_2562Imported
OrganismiPedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290)Imported
Taxonomic identifieri485917 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesSphingobacteriiaSphingobacterialesSphingobacteriaceaePedobacter
ProteomesiUP000000852: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi485917.Phep_2562.

Structurei

3D structure databases

ProteinModelPortaliC6Y054.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiNRHKSGV.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6Y054-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKRFTKLIQQ LEMSNKTNDK IAALVDYFNE ADELDKPYVI AMFTGKRPKR
60 70 80 90 100
PVSTALIRQW ATALSGIPEW LFSECYHNVG DLSETIALVL PPASELSTRK
110 120 130 140 150
LHEWINELAL LNGKDDDDKK TFILKAWDSL ETQERFIFNK LISGNFRIGV
160 170 180 190 200
SGKMLVNALA RQTGTESSKI MHSIMGKWEP SQISYQDLMA GAHVNTDSSW
210 220 230 240 250
PYPFCLAYAL EAEPGALGEP LEWQAEWKWD GIRGQIVKRN GELFIWSRGE
260 270 280 290 300
ELVTEQFPEL HFLKDELEDG TVLDGEILSV KDGKVQAFSL LQQRLNRKTI
310 320 330 340 350
SKAQLSDAPI GFFTYDLLEH KGRDLRSDAL SLRRELLTKT IEDLLTKHVV
360 370 380 390 400
LLSPVIEFKS WAQLAKLRTI SRDINREGIM LKKMDSLYHS GRKRGDWWKW
410 420 430 440 450
KINPYTVDTV MIYAQKGSGR RASFFTDYTF AVRDGEKLVT VAKAYSGLTD
460 470 480 490 500
KEIKEVNAFV VKNAIEKFGP VRTVRPELVF EIAFEGIAES KRHKAGLALR
510 520 530
FPRIARWRKD KKADEINTLD DLKQLLQATL LPAKA
Length:535
Mass (Da):61,116
Last modified:September 22, 2009 - v1
Checksum:i57A7BAEC8DF1833A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001681 Genomic DNA. Translation: ACU04766.1.
RefSeqiWP_015808378.1. NC_013061.1.
YP_003092828.1. NC_013061.1.

Genome annotation databases

EnsemblBacteriaiACU04766; ACU04766; Phep_2562.
GeneIDi8253669.
KEGGiphe:Phep_2562.
PATRICi22882213. VBIPedHep98714_2583.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001681 Genomic DNA. Translation: ACU04766.1 .
RefSeqi WP_015808378.1. NC_013061.1.
YP_003092828.1. NC_013061.1.

3D structure databases

ProteinModelPortali C6Y054.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 485917.Phep_2562.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACU04766 ; ACU04766 ; Phep_2562 .
GeneIDi 8253669.
KEGGi phe:Phep_2562.
PATRICi 22882213. VBIPedHep98714_2583.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi NRHKSGV.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci PHEP485917:GHL9-2586-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 13125 / DSM 2366 / NCIB 9290Imported.

Entry informationi

Entry nameiC6Y054_PEDHD
AccessioniPrimary (citable) accession number: C6Y054
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: October 29, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3