C6Y054 (C6Y054_PEDHD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ACU04766.1

Gene names

Ordered Locus Names:

Phep_2562

Organism

Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) [Complete proteome] [HAMAP]

Taxonomic identifier

485917 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Sphingobacteriia › Sphingobacteriales › Sphingobacteriaceae › Pedobacter › Pedobacter heparinus

Protein attributes

Sequence length	535 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACU04766.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6Y054 [UniParc]. Last modified September 22, 2009. Version 1. Checksum: 57A7BAEC8DF1833A	FASTA	535	61,116
	10 20 30 40 50 60 MKRFTKLIQQ LEMSNKTNDK IAALVDYFNE ADELDKPYVI AMFTGKRPKR PVSTALIRQW 70 80 90 100 110 120 ATALSGIPEW LFSECYHNVG DLSETIALVL PPASELSTRK LHEWINELAL LNGKDDDDKK 130 140 150 160 170 180 TFILKAWDSL ETQERFIFNK LISGNFRIGV SGKMLVNALA RQTGTESSKI MHSIMGKWEP 190 200 210 220 230 240 SQISYQDLMA GAHVNTDSSW PYPFCLAYAL EAEPGALGEP LEWQAEWKWD GIRGQIVKRN 250 260 270 280 290 300 GELFIWSRGE ELVTEQFPEL HFLKDELEDG TVLDGEILSV KDGKVQAFSL LQQRLNRKTI 310 320 330 340 350 360 SKAQLSDAPI GFFTYDLLEH KGRDLRSDAL SLRRELLTKT IEDLLTKHVV LLSPVIEFKS 370 380 390 400 410 420 WAQLAKLRTI SRDINREGIM LKKMDSLYHS GRKRGDWWKW KINPYTVDTV MIYAQKGSGR 430 440 450 460 470 480 RASFFTDYTF AVRDGEKLVT VAKAYSGLTD KEIKEVNAFV VKNAIEKFGP VRTVRPELVF 490 500 510 520 530 EIAFEGIAES KRHKAGLALR FPRIARWRKD KKADEINTLD DLKQLLQATL LPAKA

References

[1]

"Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3)." Han C., Spring S., Lapidus A., Glavina del Rio T., Tice H., Copeland A., Cheng J.-F., Lucas S., Chen F., Nolan M., Bruce D., Goodwin L., Pitluck S., Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A. , Palaniappan K., Land M., Hauser L., Chang Y.-J., Jeffries C.C., Saunders E., Chertkov O., Brettin T., Goeker M., Rohde M., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N., Klenk H.-P., Detter J.C. Stand. Genomic Sci. 1:54-62(2009) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 13125 / DSM 2366 / NCIB 9290.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001681 Genomic DNA. Translation: ACU04766.1.
RefSeq	YP_003092828.1. NC_013061.1.
3D structure databases
ProteinModelPortal	C6Y054.
ModBase	Search...
Protein-protein interaction databases
STRING	485917.Phep_2562.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACU04766; ACU04766; Phep_2562.
GeneID	8253669.
KEGG	phe:Phep_2562.
PATRIC	22882213. VBIPedHep98714_2583.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	CLSK2553454.
Enzyme and pathway databases
BioCyc	PHEP485917:GHL9-2585-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6Y054_PEDHD

Accession

Primary (citable) accession number: C6Y054

Entry history

Integrated into UniProtKB/TrEMBL:	September 22, 2009
Last sequence update:	September 22, 2009
Last modified:	May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)