C6XY00 (C6XY00_PEDHD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glycosyl hydrolase BNR repeat-containing protein EMBL ACU04418.1
EC=3.2.1.18 EMBL ACU04418.1

Gene names

Ordered Locus Names:

Phep_2214

Organism

Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) [Complete proteome] [HAMAP]

Taxonomic identifier

485917 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Sphingobacteriia › Sphingobacteriales › Sphingobacteriaceae › Pedobacter › Pedobacter heparinus

Protein attributes

Sequence length	549 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Glycosidase EMBL ACU04418.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular_function	exo-alpha-(2->3)-sialidase activity Inferred from electronic annotation. Source: EC exo-alpha-(2->6)-sialidase activity Inferred from electronic annotation. Source: EC exo-alpha-(2->8)-sialidase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6XY00 [UniParc]. Last modified September 22, 2009. Version 1. Checksum: 43CD96DBBF5E11F6	FASTA	549	60,836
	10 20 30 40 50 60 MKAIKRILNI SILCCLLPVI TVAQASQATQ KKYKIPVLKG RANNPVLRIK IELNEAAELQ 70 80 90 100 110 120 QIDILTKGTL RLNDIQDVKL LASGTDSALF KAEKAGMLRL FAAANAPLKE KTSLTGNLPL 130 140 150 160 170 180 QKGINYLWLT LSLKATANAA SFLNINATLV RLNKDSLKIT PDNYANRLGI ALRQHNQDQV 190 200 210 220 230 240 HTYRIPGLAT ANDGTLLGIY DVRRDSGRDL QGNIDIGLSR SLDKGKTWQP MQIVMDMGTW 250 260 270 280 290 300 GNLPEKFNGV SDANILVDKK TGHIFIAGLW MYGVINEQGK WLEGLTEQSK DWNHQWKTKG 310 320 330 340 350 360 SQPGFEPKQT AQFLIVKSTD HGKTWSKPVN LTKMCKQEDW WLWAPAPGQG ITMKNGTLVF 370 380 390 400 410 420 PTQGRNASGK AFSNLTYSSD GGHTWKTSRA ATQESTTENM VVELTDGTLM LNMRSNANSK 430 440 450 460 470 480 DTSSTNGRAI AITNNMGQDW TLHPTSHQAL PEPTCMASII RHDFVQNGKK RSVLLFSNPD 490 500 510 520 530 540 AKTARKNMTI KVSYDDGKTW SSDKKILLDE EKSRGYSCLT SIDNNTIGIL YEGSQADMVF QTIKLDELL

References

[1]

"Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3)." Han C., Spring S., Lapidus A., Glavina del Rio T., Tice H., Copeland A., Cheng J.-F., Lucas S., Chen F., Nolan M., Bruce D., Goodwin L., Pitluck S., Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A. , Palaniappan K., Land M., Hauser L., Chang Y.-J., Jeffries C.C., Saunders E., Chertkov O., Brettin T., Goeker M., Rohde M., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N., Klenk H.-P., Detter J.C. Stand. Genomic Sci. 1:54-62(2009) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 13125 / DSM 2366 / NCIB 9290.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001681 Genomic DNA. Translation: ACU04418.1.
RefSeq	YP_003092480.1. NC_013061.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	485917.Phep_2214.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACU04418; ACU04418; Phep_2214.
GeneID	8253320.
KEGG	phe:Phep_2214.
PATRIC	22881507. VBIPedHep98714_2231.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG4409.
HOGENOM	HOG000252336.
KO	K01186.
OMA	QADMVFQ.
ProtClustDB	CLSK2307937.
Enzyme and pathway databases
BioCyc	PHEP485917:GHL9-2236-MONOMER.
Family and domain databases
Gene3D	2.120.10.10. 1 hit.
InterPro	IPR026948. Sialidase. IPR026856. Sialidase_fam. IPR011040. Sialidases. [Graphical view]
PANTHER	PTHR10628. PTHR10628. 1 hit. PTHR10628:SF5. PTHR10628:SF5. 1 hit.
SUPFAM	SSF50939. Sialidase. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C6XY00_PEDHD

Accession

Primary (citable) accession number: C6XY00

Entry history

Integrated into UniProtKB/TrEMBL:	September 22, 2009
Last sequence update:	September 22, 2009
Last modified:	May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)