Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Alpha-L-rhamnosidase

Gene

Phep_3976

Organism
Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciPHEP485917:GHL9-4027-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-L-rhamnosidaseImported
Gene namesi
Ordered Locus Names:Phep_3976Imported
OrganismiPedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290)Imported
Taxonomic identifieri485917 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesSphingobacteriiaSphingobacterialesSphingobacteriaceaePedobacter
Proteomesi
  • UP000000852 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2727Sequence analysisAdd
BLAST
Chaini28 – 796769Sequence analysisPRO_5002974192Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi485917.Phep_3976.

Structurei

3D structure databases

ProteinModelPortaliC6XVU2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini277 – 771495Bac_rhamnosidInterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105E48. Bacteria.
ENOG410XRPP. LUCA.
HOGENOMiHOG000252876.
OMAiWEVSIRT.
OrthoDBiEOG600DKC.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
InterProiIPR008928. 6-hairpin_glycosidase-like.
IPR008902. Bac_rhamnosid.
IPR008979. Galactose-bd-like.
[Graphical view]
PfamiPF05592. Bac_rhamnosid. 1 hit.
[Graphical view]
SUPFAMiSSF48208. SSF48208. 1 hit.
SSF49785. SSF49785. 1 hit.

Sequencei

Sequence statusi: Complete.

C6XVU2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTNFSCIAKR ITSFLMLFLS CSPFITAQVK SGTIVYPRGS FDADWISCPD
60 70 80 90 100
VNLKSYGVFH MRKVFELTSR PKQFVVHVSG DQRYRLFANG TPVCFGPARG
110 120 130 140 150
DLRNWNYETI DIAPYLKTGK NVLAVQLWNM GSGAPAAQLT YQTGFILQGN
160 170 180 190 200
SNAEQMVNTN NSWRIIQNKG YFPEPFPPSR LASYIVGSCD SVVFKNYPFG
210 220 230 240 250
WQNINYDDKS WLSPVSETKP RYYTEKRSLI PRSIPMMEEK IEPITGIVRI
260 270 280 290 300
LGTDTSAILN SFNKNGSITI PANTKATILF DRKTLTTAYP EITFSKGSNG
310 320 330 340 350
KVKITYAESL FNSENLKGNR NEIKNKTIKG YYDVFLPDGG TAHTFRPLWT
360 370 380 390 400
RTFRYIQFDI TTGSEPMVID KMQSVFTAYP FKEHAFFTSN DSTLHEIWDV
410 420 430 440 450
SWRTARLCAN ETYMDCPYYE QLQYVGDTRI QALISLYVSG DDRLMRNAIE
460 470 480 490 500
QFHQSQIPDG LTMDAYPAGG GKFIPPFSLF WIAMLHDFYW YRDDEKFIEK
510 520 530 540 550
YLIPMEAILK WFEYRLDNNS GMLGKTGYWN FVDWSFSPKG IPSGGLEGNS
560 570 580 590 600
SILSLQYVYA LEQAAEIFAH AKQQQKADYY HNLGQKIKRA VYARCYDINN
610 620 630 640 650
RLLADSPERK AFSQHANIWS IITDCIPFKD QEATMERIMN DSTLTATSLY
660 670 680 690 700
YRFYYTKAMK KAGLGSLYLS SLRPWKQMLD LGFSTFPETL APNVRSDCHA
710 720 730 740 750
WSASPCYDFL ATVCGIEPGT PGFATVRISP NLGNLKAVSG ELPHPLGPIK
760 770 780 790
VSYKKIKEGS YSAHIELPAN LNGIFISKDQ KVILTGGKQE ITFKYE
Length:796
Mass (Da):90,495
Last modified:September 22, 2009 - v1
Checksum:i3455E7CDE06CE59F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001681 Genomic DNA. Translation: ACU06167.1.
RefSeqiWP_015809775.1. NZ_AQGK01000003.1.

Genome annotation databases

EnsemblBacteriaiACU06167; ACU06167; Phep_3976.
KEGGiphe:Phep_3976.
PATRICi22885189. VBIPedHep98714_4043.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001681 Genomic DNA. Translation: ACU06167.1.
RefSeqiWP_015809775.1. NZ_AQGK01000003.1.

3D structure databases

ProteinModelPortaliC6XVU2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi485917.Phep_3976.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU06167; ACU06167; Phep_3976.
KEGGiphe:Phep_3976.
PATRICi22885189. VBIPedHep98714_4043.

Phylogenomic databases

eggNOGiENOG4105E48. Bacteria.
ENOG410XRPP. LUCA.
HOGENOMiHOG000252876.
OMAiWEVSIRT.
OrthoDBiEOG600DKC.

Enzyme and pathway databases

BioCyciPHEP485917:GHL9-4027-MONOMER.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
InterProiIPR008928. 6-hairpin_glycosidase-like.
IPR008902. Bac_rhamnosid.
IPR008979. Galactose-bd-like.
[Graphical view]
PfamiPF05592. Bac_rhamnosid. 1 hit.
[Graphical view]
SUPFAMiSSF48208. SSF48208. 1 hit.
SSF49785. SSF49785. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 13125 / DSM 2366 / NCIB 9290Imported.

Entry informationi

Entry nameiC6XVU2_PEDHD
AccessioniPrimary (citable) accession number: C6XVU2
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: December 9, 2015
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.