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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Phep_1263

Organism
Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei239 – 2391NucleophileUniRule annotation
Active sitei269 – 2691Proton donorUniRule annotation

GO - Molecular functioni

  1. calcium ion binding Source: InterPro
  2. glucan 1,4-alpha-maltohexaosidase activity Source: UniProtKB-EC

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Enzyme and pathway databases

BioCyciPHEP485917:GHL9-1278-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported (EC:3.2.1.98Imported)
Gene namesi
Ordered Locus Names:Phep_1263Imported
OrganismiPedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290)Imported
Taxonomic identifieri485917 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesSphingobacteriiaSphingobacterialesSphingobacteriaceaePedobacter
ProteomesiUP000000852 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi485917.Phep_1263.

Structurei

3D structure databases

ProteinModelPortaliC6XSD4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000094847.
KOiK01176.
OMAiFFHWYYP.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

C6XSD4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYIHYMDNQT LLQYFHWYYN ENEKLWVKAM KDAVTLAGAG ITGVWLPPAY
60 70 80 90 100
KANSGGQSVG YDPYDLFDLG EFDQKNTLET RYGSKMEYQQ AIKAFQEHGI
110 120 130 140 150
AVIADVVFNH KAGGDELEKI MVRTVDPDNR LEFTSDIFEI EAWTKFTFPG
160 170 180 190 200
RNGQYSEFIW DKNCFSGIDW AENLKETGIY SIQNEYGEGW EEVPSTELGN
210 220 230 240 250
YDYLMYNDIE FRNPAVRAEL KYWGEWYIKN CGMNGFRLDA VKHISTDFLT
260 270 280 290 300
EWLDHIRDTF SRDFFIVAEN WNIEDPAALT HYLEITEGRM QLFDPMLHHN
310 320 330 340 350
FYLASTTENY DLTRIFDHTL VQSHPEFAVT FVDNHDSQPL QALESYVDFW
360 370 380 390 400
FRPLAYALIL LREQGIPCVF YPDLYGAKYT DKTEEGYDAG VELVALAALP
410 420 430 440 450
DMLRIRKDLA YGEQHDYMDF PSCIGWTREG VPEKENSGIA VLMSNGDTGL
460 470 480 490
KLMEIGKVHT GRVMVDALGI RAEEVLIDEN GCGEFYCDAG SVSIWVLSS
Length:499
Mass (Da):57,461
Last modified:September 21, 2009 - v1
Checksum:i7C74C41319A5C7F6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001681 Genomic DNA. Translation: ACU03479.1.
RefSeqiYP_003091541.1. NC_013061.1.

Genome annotation databases

EnsemblBacteriaiACU03479; ACU03479; Phep_1263.
KEGGiphe:Phep_1263.
PATRICi22879601. VBIPedHep98714_1286.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001681 Genomic DNA. Translation: ACU03479.1.
RefSeqiYP_003091541.1. NC_013061.1.

3D structure databases

ProteinModelPortaliC6XSD4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi485917.Phep_1263.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU03479; ACU03479; Phep_1263.
KEGGiphe:Phep_1263.
PATRICi22879601. VBIPedHep98714_1286.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000094847.
KOiK01176.
OMAiFFHWYYP.
OrthoDBiEOG65QWH3.

Enzyme and pathway databases

BioCyciPHEP485917:GHL9-1278-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 13125 / DSM 2366 / NCIB 9290Imported.

Entry informationi

Entry nameiC6XSD4_PEDHD
AccessioniPrimary (citable) accession number: C6XSD4
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2009
Last sequence update: September 21, 2009
Last modified: March 31, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.