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C6XH78 (C6XH78_LIBAP) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Elongation factor Tu RuleBase RU004061
Gene names
Ordered Locus Names:CLIBASIA_00150 EMBL ACT56623.1, CLIBASIA_00740 EMBL ACT56736.1
OrganismLiberibacter asiaticus (strain psy62) [Complete proteome] [HAMAP] EMBL ACT56623.1
Taxonomic identifier537021 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeCandidatus Liberibacter

Protein attributes

Sequence length392 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325

Sequences

Sequence LengthMass (Da)Tools
C6XH78 [UniParc].

Last modified September 22, 2009. Version 1.
Checksum: 78F17D4BEA52DC51

FASTA39242,942
        10         20         30         40         50         60 
MVEKRYVRNK ESLGLSTIGH VDHGKTTLTA AITKYYSEEK KEYGDIDSAP EEKLRGITIA 

        70         80         90        100        110        120 
TAHVSYETDK RFYSHIDCPG HADYVKNMIT GATQADGAIL VCAAEDGPKP QTREHILLAR 

       130        140        150        160        170        180 
QIGISSIVVY MNKVDAVDDD ELLDISEYEI RDLLKEHKYS DDTPIIRGSA LCALQGTNKE 

       190        200        210        220        230        240 
LGEDSIHALM KAVDTHIPTP QRSLDAPFLM HIEGSCGIEG RGTVVTGCIK RGRIKAGSDV 

       250        260        270        280        290        300 
EIIGMGGKKL KVKCTDVEMF RKKLDEAIAG DNVGLLLRGV NRADVPRGRV VCAPGSIQEY 

       310        320        330        340        350        360 
SRFRASVYIL TASEGGRTTG FMDNYRPQFF MDTADVTGRI ILSPGSQAVM PGDRVDLEVE 

       370        380        390 
LIYPIAMEPN QTFSMREGGK TVGAGLILEI IE 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics."
Duan Y., Zhou L., Hall D.G., Li W., Doddapaneni H., Lin H., Liu L., Vahling C.M., Gabriel D.W., Williams K.P., Dickerman A., Sun Y., Gottwald T.
Mol. Plant Microbe Interact. 22:1011-1020(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Psy62 EMBL ACT56623.1 and psy62.
[2]Duan Y.P., Zhou L.J., Hall D., Li W.B., Liu L., Gottwald T.R.
Submitted (SEP-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Psy62 EMBL ACT56623.1.
[3]"Diversity and plasticity of the intracellular plant pathogen and insect symbiont "Candidatus Liberibacter asiaticus" as revealed by hypervariable prophage genes with intragenic tandem repeats."
Zhou L., Powell C.A., Hoffman M.T., Li W., Fan G., Liu B., Lin H., Duan Y.
Appl. Environ. Microbiol. 77:6663-6673(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Psy62 EMBL ACT56623.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001677 Genomic DNA. Translation: ACT56623.1.
CP001677 Genomic DNA. Translation: ACT56736.1.
RefSeqYP_003064563.1. NC_012985.3.
YP_003064676.1. NC_012985.3.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING537021.CLIBASIA_00740.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT56623; ACT56623; CLIBASIA_00150.
ACT56736; ACT56736; CLIBASIA_00740.
GeneID8209126.
8209244.
KEGGlas:CLIBASIA_00150.
las:CLIBASIA_00740.
PATRIC31987070. VBICanLib64949_0031.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0050.
HOGENOMHOG000229290.
KOK02358.
OMAVTPHTEF.
OrthoDBEOG6R5C6X.
ProtClustDBCLSK2552299.

Enzyme and pathway databases

BioCycLASI537021:GHEM-148-MONOMER.
LASI537021:GHEM-30-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6XH78_LIBAP
AccessionPrimary (citable) accession number: C6XH78
Entry history
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: April 16, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)