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C6XGM1

- C6XGM1_LIBAP

UniProt

C6XGM1 - C6XGM1_LIBAP

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Protein
Submitted name:

Alpha-ketoglutarate decarboxylase

Gene

kgd

Organism
Liberibacter asiaticus (strain psy62)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. oxoglutarate dehydrogenase (succinyl-transferring) activity Source: UniProtKB-EC
  2. thiamine pyrophosphate binding Source: InterPro

GO - Biological processi

  1. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseImported

Enzyme and pathway databases

BioCyciLASI537021:GHEM-983-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-ketoglutarate decarboxylaseImported (EC:1.2.4.2Imported)
Gene namesi
Name:kgdImported
Ordered Locus Names:CLIBASIA_04765Imported
OrganismiLiberibacter asiaticus (strain psy62)Imported
Taxonomic identifieri537021 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeCandidatus Liberibacter
ProteomesiUP000002744: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi537021.CLIBASIA_04765.

Structurei

3D structure databases

ProteinModelPortaliC6XGM1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0567.
HOGENOMiHOG000259588.
KOiK00164.
OMAiGFTTAPH.
OrthoDBiEOG6V1M1F.

Family and domain databases

Gene3Di3.40.50.970. 2 hits.
InterProiIPR011603. 2oxoglutarate_DH_E1.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view]
PANTHERiPTHR23152. PTHR23152. 1 hit.
PfamiPF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view]
PIRSFiPIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTiSM00861. Transket_pyr. 1 hit.
[Graphical view]
SUPFAMiSSF52518. SSF52518. 2 hits.
TIGRFAMsiTIGR00239. 2oxo_dh_E1. 1 hit.

Sequencei

Sequence statusi: Complete.

C6XGM1-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MLQDLNKMFS LSSFLDGTNC CYIEDLYKSY QEDPSSVCKD WYPLFSFLDE
60 70 80 90 100
NSEEYDNLED GIASFLKEES VASAVFSQKK SAVESSCSLG ETQSVKDFFQ
110 120 130 140 150
VMKMIDAYRS YGHFKANIDP LGYNSHQKDL SELSPAHYGF VKADYDRKIC
160 170 180 190 200
MKGVLGLESA TIPEIVDVLS HLYCSNIGVE FMHIVDSIER DWVRNTIEDY
210 220 230 240 250
DFSSNFSKEE QRDILDKLVR AEGFEKFIDI KYKGAKRFGA DGSEVIIPAI
260 270 280 290 300
EEIIRQGVQQ GVDEMILGMA HRGRLNVLSQ IMNKLPRSIF YEFKGKGPSE
310 320 330 340 350
KEYSGDVKYH LGLCCNRQIC GKDVKLLLQS NPSHLEFVDP VVIGSVRARQ
360 370 380 390 400
DLKAGIVGEK SISLVERSRV LPLIIHGDAA FAGQGIVSET FGLSGLSGYT
410 420 430 440 450
VAGNIHLIIN NQIGFTTNPS SARSCTYASD ISKSIGIPIF HVNGDDPEAV
460 470 480 490 500
IRVVRMAVSF RMKFHKSVVI DIVCYRRFGH NEGDEPSFTQ PMMYKTIRSH
510 520 530 540 550
KSVLQLYADS LMKNQVISKQ ELQSLANNWH KYLEAEYKES ESYCPEKLGL
560 570 580 590 600
LHNGENERKN SVSKEILKKI GSSIIRLPKS FNTHKIVERL MANRQKMIET
610 620 630 640 650
GKGIDWSMAE SLAFGSLCYE GYKVRLSGQD CERGTFSHRH AILCDQETGK
660 670 680 690 700
RYFPLGNISK DQGHCEVVNS FLSEQAVLGF EYGYSLNNLN ALTIWEAQFG
710 720 730 740 750
DFANGAQVIL DQFITAGEQK WLCTSNLVCL LPHGYEGQGP EHSSARLERF
760 770 780 790 800
LQMCAENNMY VANCTSPANY FHILRRQIYD RSSRPLIMMA PKSLLRHKRV
810 820 830 840 850
VSSLSDMTCG SVFQAVLSDD AEYHGKTSVK LKEDSHIRRV ILCTGKVYYD
860 870 880 890 900
LLDNRDMRNI ADIYLLRIEQ LYPFPEDYLI KVLSRFVQAE IVWCQEEPQN
910 920 930 940 950
MGAWTFIEPY LEKVLHSIGA DYSRVRYVGR LPSASTAVGH MSRHLEQLSS

FIEDALK
Length:957
Mass (Da):108,382
Last modified:September 22, 2009 - v1
Checksum:i6C10728192F7FD5D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001677 Genomic DNA. Translation: ACT57524.1.
RefSeqiYP_003065464.1. NC_012985.3.

Genome annotation databases

EnsemblBacteriaiACT57524; ACT57524; CLIBASIA_04765.
GeneIDi8210074.
KEGGilas:CLIBASIA_04765.
PATRICi31989080. VBICanLib64949_0986.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001677 Genomic DNA. Translation: ACT57524.1 .
RefSeqi YP_003065464.1. NC_012985.3.

3D structure databases

ProteinModelPortali C6XGM1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 537021.CLIBASIA_04765.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACT57524 ; ACT57524 ; CLIBASIA_04765 .
GeneIDi 8210074.
KEGGi las:CLIBASIA_04765.
PATRICi 31989080. VBICanLib64949_0986.

Phylogenomic databases

eggNOGi COG0567.
HOGENOMi HOG000259588.
KOi K00164.
OMAi GFTTAPH.
OrthoDBi EOG6V1M1F.

Enzyme and pathway databases

BioCyci LASI537021:GHEM-983-MONOMER.

Family and domain databases

Gene3Di 3.40.50.970. 2 hits.
InterProi IPR011603. 2oxoglutarate_DH_E1.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view ]
PANTHERi PTHR23152. PTHR23152. 1 hit.
Pfami PF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view ]
PIRSFi PIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTi SM00861. Transket_pyr. 1 hit.
[Graphical view ]
SUPFAMi SSF52518. SSF52518. 2 hits.
TIGRFAMsi TIGR00239. 2oxo_dh_E1. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics."
    Duan Y., Zhou L., Hall D.G., Li W., Doddapaneni H., Lin H., Liu L., Vahling C.M., Gabriel D.W., Williams K.P., Dickerman A., Sun Y., Gottwald T.
    Mol. Plant Microbe Interact. 22:1011-1020(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Psy62Imported.
  2. "Diversity and plasticity of the intracellular plant pathogen and insect symbiont, 'Candidatus Liberibacter asiaticus', revealed by hyper variable prophage genes with intragenic tandem repeats."
    Zhou L., Powell C.A., Hoffman M.T., Li W., Fan G., Liu B., Lin H., Duan Y.
    Appl. Environ. Microbiol. 77:6663-6673(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: psy62Imported.

Entry informationi

Entry nameiC6XGM1_LIBAP
AccessioniPrimary (citable) accession number: C6XGM1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: October 1, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3