C6XBR4 (C6XBR4_METSD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase III, epsilon subunit EMBL ACT52034.1
EC=2.7.7.7 EMBL ACT52034.1

Gene names

Ordered Locus Names:

Msip34_2797 EMBL ACT52034.1

Organism

Methylovorus sp. (strain SIP3-4) (Methylotenera sp. (strain SIP3-4)) [Complete proteome] [HAMAP] EMBL ACT52034.1

Taxonomic identifier

582744 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Methylophilales › Methylophilaceae › Methylovorus › Methylovorus glucosotrophus

Protein attributes

Sequence length	470 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Catalytic activity

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). SAAS SAAS006054

Ontologies

Keywords
Biological process	DNA replication SAAS SAAS006054
Molecular function	DNA-directed DNA polymerase SAAS SAAS006054 Nucleotidyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA replication Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro DNA-directed DNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW exonuclease activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6XBR4 [UniParc]. Last modified September 22, 2009. Version 1. Checksum: 39992B950CE3ED44	FASTA	470	52,663
	10 20 30 40 50 60 MLPAYVLLDL ETTGATPLVD RITEIALIRF ENGQEVSRWQ TLVNPETAIP PFIQRLTGID 70 80 90 100 110 120 DGMVATAPRF REVAGELLNH LEGAVLCAHN VRFDHGFLKN EFKRIGIDLR QKVLCTVKLS 130 140 150 160 170 180 RKLYPQHRSH SLDSIIERHS LQCGARHRAM GDVVALVDFL RAAEAELGPV VIAQAARELL 190 200 210 220 230 240 KGHTLPSGID ASILDDIPEG PGVYLFYGDN QLPLYIGKSI NIRSRVLSHF SGDHASTKEM 250 260 270 280 290 300 RISQEVKHIE WIETAGEFSA LMLESRLVKE RQPIYNRRLR RERQLCSWRL AASHDARPLL 310 320 330 340 350 360 TLVREEEIDP PELGQLFGTF RSKRQAVEVL RQIAENHALC PKVLGLESGK GPCFSHQLRK 370 380 390 400 410 420 CKGVCAGKEA AELHYLRLQQ ALAAHRMKTW PYPGKIGIHE RNPLTGQSQL HVFEHWCALG 430 440 450 460 470 SVDDEASLHS LASSKTSLMF DLDTYKLLLR ELAKASANIK CLVTGTTMVA

References

[1]

"Complete sequence of chromosome of Methylovorus sp. SIP3-4." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Kayluzhnaya M., Chistoserdova L. Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SIP3-4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001674 Genomic DNA. Translation: ACT52034.1.
RefSeq	YP_003052561.1. NC_012969.1.
3D structure databases
ProteinModelPortal	C6XBR4.
ModBase	Search...
Protein-protein interaction databases
STRING	582744.Msip34_2797.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACT52034; ACT52034; Msip34_2797.
GeneID	8173650.
KEGG	mei:Msip34_2797.
PATRIC	22620490. VBIMetSp110381_2715.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0322.
KO	K02342.
OMA	QFWQKIH.
ProtClustDB	CLSK2486729.
Enzyme and pathway databases
BioCyc	MGLU582744:GHXQ-2945-MONOMER.
Family and domain databases
Gene3D	3.40.1440.10. 1 hit.
InterPro	IPR006054. DnaQ. IPR006055. Exonuclease. IPR013520. Exonuclease_RNaseT/DNA_pol3. IPR027299. GIY-YIG_dom. IPR000305. GIY-YIG_SF. IPR012337. RNaseH-like_dom. [Graphical view]
Pfam	PF01541. GIY-YIG. 1 hit. PF00929. RNase_T. 1 hit. [Graphical view]
SMART	SM00479. EXOIII. 1 hit. SM00465. GIYc. 1 hit. [Graphical view]
SUPFAM	SSF53098. RNaseH_fold. 1 hit. SSF82771. UvrC_N. 1 hit.
TIGRFAMs	TIGR00573. dnaq. 1 hit.
PROSITE	PS50164. GIY_YIG. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6XBR4_METSD

Accession

Primary (citable) accession number: C6XBR4

Entry history

Integrated into UniProtKB/TrEMBL:	September 22, 2009
Last sequence update:	September 22, 2009
Last modified:	May 1, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)