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C6XBR4 (C6XBR4_METSD) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=2.7.7.7 EMBL ACT52034.1
Gene names
Ordered Locus Names:Msip34_2797 EMBL ACT52034.1
OrganismMethylovorus sp. (strain SIP3-4) (Methylotenera sp. (strain SIP3-4)) [Complete proteome] [HAMAP] EMBL ACT52034.1
Taxonomic identifier582744 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaMethylophilalesMethylophilaceaeMethylovorus

Protein attributes

Sequence length470 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Catalytic activity

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). SAAS SAAS013520

Sequences

Sequence LengthMass (Da)Tools
C6XBR4 [UniParc].

Last modified September 22, 2009. Version 1.
Checksum: 39992B950CE3ED44

FASTA47052,663
        10         20         30         40         50         60 
MLPAYVLLDL ETTGATPLVD RITEIALIRF ENGQEVSRWQ TLVNPETAIP PFIQRLTGID 

        70         80         90        100        110        120 
DGMVATAPRF REVAGELLNH LEGAVLCAHN VRFDHGFLKN EFKRIGIDLR QKVLCTVKLS 

       130        140        150        160        170        180 
RKLYPQHRSH SLDSIIERHS LQCGARHRAM GDVVALVDFL RAAEAELGPV VIAQAARELL 

       190        200        210        220        230        240 
KGHTLPSGID ASILDDIPEG PGVYLFYGDN QLPLYIGKSI NIRSRVLSHF SGDHASTKEM 

       250        260        270        280        290        300 
RISQEVKHIE WIETAGEFSA LMLESRLVKE RQPIYNRRLR RERQLCSWRL AASHDARPLL 

       310        320        330        340        350        360 
TLVREEEIDP PELGQLFGTF RSKRQAVEVL RQIAENHALC PKVLGLESGK GPCFSHQLRK 

       370        380        390        400        410        420 
CKGVCAGKEA AELHYLRLQQ ALAAHRMKTW PYPGKIGIHE RNPLTGQSQL HVFEHWCALG 

       430        440        450        460        470 
SVDDEASLHS LASSKTSLMF DLDTYKLLLR ELAKASANIK CLVTGTTMVA 

« Hide

References

[1]"Complete sequence of chromosome of Methylovorus sp. SIP3-4."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Kayluzhnaya M., Chistoserdova L.
Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SIP3-4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001674 Genomic DNA. Translation: ACT52034.1.
RefSeqYP_003052561.1. NC_012969.1.

3D structure databases

ProteinModelPortalC6XBR4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING582744.Msip34_2797.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT52034; ACT52034; Msip34_2797.
GeneID8173650.
KEGGmei:Msip34_2797.
PATRIC22620490. VBIMetSp110381_2715.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0322.
KOK02342.
OMAQFWQKIH.
OrthoDBEOG6PKFH3.
ProtClustDBCLSK2486729.

Enzyme and pathway databases

BioCycMGLU582744:GHXQ-2853-MONOMER.

Family and domain databases

Gene3D3.30.420.10. 1 hit.
3.40.1440.10. 1 hit.
InterProIPR006054. DnaQ.
IPR006055. Exonuclease.
IPR013520. Exonuclease_RNaseT/DNA_pol3.
IPR027299. GIY-YIG_dom.
IPR000305. GIY-YIG_SF.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamPF01541. GIY-YIG. 1 hit.
PF00929. RNase_T. 1 hit.
[Graphical view]
SMARTSM00479. EXOIII. 1 hit.
SM00465. GIYc. 1 hit.
[Graphical view]
SUPFAMSSF53098. SSF53098. 1 hit.
SSF82771. SSF82771. 1 hit.
TIGRFAMsTIGR00573. dnaq. 1 hit.
PROSITEPS50164. GIY_YIG. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6XBR4_METSD
AccessionPrimary (citable) accession number: C6XBR4
Entry history
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: April 16, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)