C6X8U8 (C6X8U8_METSD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S5 HAMAP-Rule MF_01307

Gene names

Name:	rpsE HAMAP-Rule MF_01307
Ordered Locus Names:	Msip34_0319 EMBL ACT49568.1

Organism

Methylovorus sp. (strain SIP3-4) (Methylotenera sp. (strain SIP3-4)) [Complete proteome] [HAMAP] EMBL ACT49568.1

Taxonomic identifier

582744 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Methylophilales › Methylophilaceae › Methylovorus › Methylovorus glucosotrophus

Protein attributes

Sequence length	168 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307 With S4 and S12 plays an important role in translational accuracy By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307
Subunit structure	Part of the 30S ribosomal subunit. Contacts proteins S4 and S8 By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307
Domain	The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity By similarity. HAMAP-Rule MF_01307
Sequence similarities	Belongs to the ribosomal protein S5P family. RuleBase RU003823 HAMAP-Rule MF_01307 Contains 1 S5 DRBM domain. SAAS SAAS005712 HAMAP-Rule MF_01307

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding SAAS SAAS005712 HAMAP-Rule MF_01307
Molecular function	Ribonucleoprotein Ribosomal protein RuleBase RU003823 SAAS SAAS005712 HAMAP-Rule MF_01307 EMBL ACT49568.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	small ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Domain	13 – 76	64	S5 DRBM By similarity HAMAP-Rule MF_01307

Sequences

	Sequence		Length	Mass (Da)
	C6X8U8 [UniParc]. Last modified September 22, 2009. Version 1. Checksum: 04F3610CDA27A43B	FASTA	168	17,542
	10 20 30 40 50 60 MAKDIEQQQT DGLREKMISV NRVTKVVKGG RIMSFAALTV VGDGDGAVGM GKGKAREVPV 70 80 90 100 110 120 AVQKAMDEAR RGMVKVSLNN GTLHHAVTGV HGAAKVFIQP ASEGTGIIAG GAMRAIFEVM 130 140 150 160 GITNVLAKCI GSTNPYNVVR ATLNGLQSMN TPAEVAAKRG KTVEEIRG

References

[1]

"Complete sequence of chromosome of Methylovorus sp. SIP3-4." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Kayluzhnaya M., Chistoserdova L. Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SIP3-4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001674 Genomic DNA. Translation: ACT49568.1.
RefSeq	YP_003050095.1. NC_012969.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	582744.Msip34_0319.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACT49568; ACT49568; Msip34_0319.
GeneID	8173829.
KEGG	mei:Msip34_0319.
PATRIC	22615622. VBIMetSp110381_0321.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0098.
KO	K02988.
OMA	HNVVKAT.
ProtClustDB	PRK00550.
Enzyme and pathway databases
BioCyc	MGLU582744:GHXQ-333-MONOMER.
Family and domain databases
Gene3D	3.30.160.20. 1 hit. 3.30.230.10. 1 hit.
HAMAP	MF_01307_B. Ribosomal_S5_B.
InterPro	IPR014720. dsRNA-bd-like_dom. IPR000851. Ribosomal_S5. IPR005712. Ribosomal_S5_bac-type. IPR005324. Ribosomal_S5_C. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR013810. Ribosomal_S5_N. IPR018192. Ribosomal_S5_N_CS. [Graphical view]
PANTHER	PTHR13718. PTHR13718. 1 hit.
Pfam	PF00333. Ribosomal_S5. 1 hit. PF03719. Ribosomal_S5_C. 1 hit. [Graphical view]
SUPFAM	SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMs	TIGR01021. rpsE_bact. 1 hit.
PROSITE	PS00585. RIBOSOMAL_S5. 1 hit. PS50881. S5_DSRBD. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6X8U8_METSD

Accession

Primary (citable) accession number: C6X8U8

Entry history

Integrated into UniProtKB/TrEMBL:	September 22, 2009
Last sequence update:	September 22, 2009
Last modified:	May 29, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)