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C6X8R6 (C6X8R6_METSD) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tuf HAMAP-Rule MF_00118
Ordered Locus Names:Msip34_0287 EMBL ACT49536.1, Msip34_0299 EMBL ACT49548.1
OrganismMethylovorus sp. (strain SIP3-4) (Methylotenera sp. (strain SIP3-4)) [Complete proteome] [HAMAP] EMBL ACT49536.1
Taxonomic identifier582744 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaMethylophilalesMethylophilaceaeMethylovorus

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
C6X8R6 [UniParc].

Last modified September 22, 2009. Version 1.
Checksum: 6235B4D6F15BE665

FASTA39642,781
        10         20         30         40         50         60 
MAKGKFERTK PHVNVGTIGH VDHGKTTLTA AITTILSKKF GGEAKAYDQI DAAPEEKARG 

        70         80         90        100        110        120 
ITINTAHVEY ETATRHYAHV DCPGHADYVK NMITGAAQMD GAILVCSAAD GPMPQTREHI 

       130        140        150        160        170        180 
LLARQVGVPY IVVFMNKADM VDDAELLELV EMEIRELLSK YDFPGDDIPV IKGSALKALE 

       190        200        210        220        230        240 
GDQSEIGEPA IFRLADALDS YIPTPERAVD GTFLMPVEDV FSISGRGTVV TGRIERGIVK 

       250        260        270        280        290        300 
VGDEIEIVGI KPTLKTTCTG VEMFRKLLDQ GQAGDNVGVL LRGTKREEVE RGQVLAKTGS 

       310        320        330        340        350        360 
IKPHTKFSAE IYVLGKDEGG RHTPFFNGYR PQFYFRTTDV TGAVELPAGT EMVMPGDNVS 

       370        380        390 
ITVALIAPIA MEDGLRFAIR EGGRTVGAGV VAKIIE 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of chromosome of Methylovorus sp. SIP3-4."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Kayluzhnaya M., Chistoserdova L.
Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SIP3-4.
[2]"Genomes of three methylotrophs from a single niche reveal the genetic and metabolic divergence of the methylophilaceae."
Lapidus A., Clum A., Labutti K., Kaluzhnaya M.G., Lim S., Beck D.A., Glavina Del Rio T., Nolan M., Mavromatis K., Huntemann M., Lucas S., Lidstrom M.E., Ivanova N., Chistoserdova L.
J. Bacteriol. 193:3757-3764(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: SIP3-4 EMBL ACT49536.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001674 Genomic DNA. Translation: ACT49536.1.
CP001674 Genomic DNA. Translation: ACT49548.1.
RefSeqYP_003050063.1. NC_012969.1.
YP_003050075.1. NC_012969.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING582744.Msip34_0299.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT49536; ACT49536; Msip34_0287.
ACT49548; ACT49548; Msip34_0299.
GeneID8173796.
8173809.
KEGGmei:Msip34_0287.
mei:Msip34_0299.
PATRIC22615556. VBIMetSp110381_0289.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0050.
KOK02358.
OMAVTPHTEF.
OrthoDBEOG6R5C6X.
ProtClustDBPRK00049.

Enzyme and pathway databases

BioCycMGLU582744:GHXQ-300-MONOMER.
MGLU582744:GHXQ-313-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6X8R6_METSD
AccessionPrimary (citable) accession number: C6X8R6
Entry history
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: April 16, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)