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C6X7S7

- C6X7S7_METGS

UniProt

C6X7S7 - C6X7S7_METGS

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Protein

50S ribosomal protein L25

Gene

rplY

Organism
Methylovorus glucosetrophus (strain SIP3-4)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.UniRule annotationSAAS annotation

GO - Molecular functioni

  1. 5S rRNA binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotationSAAS annotation

Keywords - Ligandi

RNA-binding, rRNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciMGLU582744:GHXQ-2056-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L25UniRule annotationSAAS annotation
Alternative name(s):
General stress protein CTCUniRule annotationSAAS annotation
Gene namesi
Name:rplYUniRule annotation
Synonyms:ctcUniRule annotation
Ordered Locus Names:Msip34_2012Imported
OrganismiMethylovorus glucosetrophus (strain SIP3-4)Imported
Taxonomic identifieri582744 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaMethylophilalesMethylophilaceaeMethylovorus
ProteomesiUP000002743: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.UniRule annotationSAAS annotation

Protein-protein interaction databases

STRINGi582744.Msip34_2012.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L25P family. CTC subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG1825.
KOiK02897.
OMAiIPVHFIN.
OrthoDBiEOG6SZ1PC.

Family and domain databases

Gene3Di2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPiMF_01334. Ribosomal_L25_CTC.
MF_01336. Ribosomal_L25.
InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR029751. Ribosomal_L25.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
IPR020055. Ribosomal_L25_short.
[Graphical view]
PfamiPF01386. Ribosomal_L25p. 1 hit.
PF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view]
ProDomiPD012503. Ribosomal_L25. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50715. SSF50715. 1 hit.
TIGRFAMsiTIGR00731. ctc_TL5. 1 hit.

Sequencei

Sequence statusi: Complete.

C6X7S7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MQIEITAVKR ENQGTGASRR LRRAGKVPGI VYGASKDAVS VEFDHKALFL
60 70 80 90 100
EFRHEAFHAS ILTLNLDGKK EQVVLRDYQM HPVRNTIQHI DFQRVSATEK
110 120 130 140 150
LHVKVPLHFI NQDIAPGVKL SGGVVTHILT EADVSCLPKD LPEFIEVDLA
160 170 180 190 200
TLEAGHSIHL SQIKLPKGVE FVQLAHENDA AVASISVPRG GAAAEEETAD

APAAE
Length:205
Mass (Da):22,360
Last modified:September 22, 2009 - v1
Checksum:i28FC76ADAF982795
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001674 Genomic DNA. Translation: ACT51254.1.
RefSeqiYP_003051781.1. NC_012969.1.

Genome annotation databases

EnsemblBacteriaiACT51254; ACT51254; Msip34_2012.
GeneIDi8173066.
KEGGimei:Msip34_2012.
PATRICi22619042. VBIMetSp110381_2003.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001674 Genomic DNA. Translation: ACT51254.1 .
RefSeqi YP_003051781.1. NC_012969.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 582744.Msip34_2012.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACT51254 ; ACT51254 ; Msip34_2012 .
GeneIDi 8173066.
KEGGi mei:Msip34_2012.
PATRICi 22619042. VBIMetSp110381_2003.

Phylogenomic databases

eggNOGi COG1825.
KOi K02897.
OMAi IPVHFIN.
OrthoDBi EOG6SZ1PC.

Enzyme and pathway databases

BioCyci MGLU582744:GHXQ-2056-MONOMER.

Family and domain databases

Gene3Di 2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPi MF_01334. Ribosomal_L25_CTC.
MF_01336. Ribosomal_L25.
InterProi IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR029751. Ribosomal_L25.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
IPR020055. Ribosomal_L25_short.
[Graphical view ]
Pfami PF01386. Ribosomal_L25p. 1 hit.
PF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view ]
ProDomi PD012503. Ribosomal_L25. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF50715. SSF50715. 1 hit.
TIGRFAMsi TIGR00731. ctc_TL5. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome of Methylovorus sp. SIP3-4."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Kayluzhnaya M., Chistoserdova L.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SIP3-4Imported.

Entry informationi

Entry nameiC6X7S7_METGS
AccessioniPrimary (citable) accession number: C6X7S7
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: November 26, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3