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C6X7S7 (C6X7S7_METSD) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
50S ribosomal protein L25 HAMAP-Rule MF_01334
Alternative name(s):
General stress protein CTC HAMAP-Rule MF_01334
Gene names
Name:rplY HAMAP-Rule MF_01334
Synonyms:ctc HAMAP-Rule MF_01334
Ordered Locus Names:Msip34_2012 EMBL ACT51254.1
OrganismMethylovorus sp. (strain SIP3-4) (Methylotenera sp. (strain SIP3-4)) [Complete proteome] [HAMAP] EMBL ACT51254.1
Taxonomic identifier582744 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaMethylophilalesMethylophilaceaeMethylovorus

Protein attributes

Sequence length205 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance By similarity. HAMAP-Rule MF_01334 SAAS SAAS020057

Subunit structure

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18 By similarity. HAMAP-Rule MF_01334 SAAS SAAS020057

Sequence similarities

Belongs to the ribosomal protein L25P family. CTC subfamily. HAMAP-Rule MF_01334

Ontologies

Sequences

Sequence LengthMass (Da)Tools
C6X7S7 [UniParc].

Last modified September 22, 2009. Version 1.
Checksum: 28FC76ADAF982795

FASTA20522,360
        10         20         30         40         50         60 
MQIEITAVKR ENQGTGASRR LRRAGKVPGI VYGASKDAVS VEFDHKALFL EFRHEAFHAS 

        70         80         90        100        110        120 
ILTLNLDGKK EQVVLRDYQM HPVRNTIQHI DFQRVSATEK LHVKVPLHFI NQDIAPGVKL 

       130        140        150        160        170        180 
SGGVVTHILT EADVSCLPKD LPEFIEVDLA TLEAGHSIHL SQIKLPKGVE FVQLAHENDA 

       190        200 
AVASISVPRG GAAAEEETAD APAAE 

« Hide

References

[1]"Complete sequence of chromosome of Methylovorus sp. SIP3-4."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Kayluzhnaya M., Chistoserdova L.
Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SIP3-4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001674 Genomic DNA. Translation: ACT51254.1.
RefSeqYP_003051781.1. NC_012969.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING582744.Msip34_2012.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT51254; ACT51254; Msip34_2012.
GeneID8173066.
KEGGmei:Msip34_2012.
PATRIC22619042. VBIMetSp110381_2003.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1825.
KOK02897.
OMAIPVHFIN.
OrthoDBEOG6SZ1PC.
ProtClustDBCLSK2529266.

Enzyme and pathway databases

BioCycMGLU582744:GHXQ-2056-MONOMER.

Family and domain databases

Gene3D2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPMF_01334. Ribosomal_L25_CTC.
MF_01336. Ribosomal_L25.
InterProIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
IPR020055. Ribosomal_L25_short.
[Graphical view]
PfamPF01386. Ribosomal_L25p. 1 hit.
PF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view]
ProDomPD012503. Ribosomal_L25. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50715. SSF50715. 1 hit.
TIGRFAMsTIGR00731. ctc_TL5. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC6X7S7_METSD
AccessionPrimary (citable) accession number: C6X7S7
Entry history
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: April 16, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)