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C6X7S7

- C6X7S7_METGS

UniProt

C6X7S7 - C6X7S7_METGS

Protein

50S ribosomal protein L25

Gene

rplY

Organism
Methylovorus glucosetrophus (strain SIP3-4)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 37 (01 Oct 2014)
      Sequence version 1 (22 Sep 2009)
      Previous versions | rss
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    Functioni

    This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.UniRule annotationSAAS annotation

    GO - Molecular functioni

    1. 5S rRNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotationSAAS annotation

    Keywords - Ligandi

    RNA-binding, rRNA-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciMGLU582744:GHXQ-2056-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L25UniRule annotation
    Alternative name(s):
    General stress protein CTCUniRule annotation
    Gene namesi
    Name:rplYUniRule annotation
    Synonyms:ctcUniRule annotation
    Ordered Locus Names:Msip34_2012Imported
    OrganismiMethylovorus glucosetrophus (strain SIP3-4)Imported
    Taxonomic identifieri582744 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaMethylophilalesMethylophilaceaeMethylovorus
    ProteomesiUP000002743: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.UniRule annotationSAAS annotation

    Protein-protein interaction databases

    STRINGi582744.Msip34_2012.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L25P family. CTC subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1825.
    KOiK02897.
    OMAiIPVHFIN.
    OrthoDBiEOG6SZ1PC.

    Family and domain databases

    Gene3Di2.170.120.20. 1 hit.
    2.40.240.10. 1 hit.
    HAMAPiMF_01334. Ribosomal_L25_CTC.
    MF_01336. Ribosomal_L25.
    InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020057. Ribosomal_L25_b-dom.
    IPR001021. Ribosomal_L25_long.
    IPR020055. Ribosomal_L25_short.
    [Graphical view]
    PfamiPF14693. Ribosomal_TL5_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF50715. SSF50715. 1 hit.
    TIGRFAMsiTIGR00731. ctc_TL5. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    C6X7S7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MQIEITAVKR ENQGTGASRR LRRAGKVPGI VYGASKDAVS VEFDHKALFL    50
    EFRHEAFHAS ILTLNLDGKK EQVVLRDYQM HPVRNTIQHI DFQRVSATEK 100
    LHVKVPLHFI NQDIAPGVKL SGGVVTHILT EADVSCLPKD LPEFIEVDLA 150
    TLEAGHSIHL SQIKLPKGVE FVQLAHENDA AVASISVPRG GAAAEEETAD 200
    APAAE 205
    Length:205
    Mass (Da):22,360
    Last modified:September 22, 2009 - v1
    Checksum:i28FC76ADAF982795
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001674 Genomic DNA. Translation: ACT51254.1.
    RefSeqiYP_003051781.1. NC_012969.1.

    Genome annotation databases

    EnsemblBacteriaiACT51254; ACT51254; Msip34_2012.
    GeneIDi8173066.
    KEGGimei:Msip34_2012.
    PATRICi22619042. VBIMetSp110381_2003.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001674 Genomic DNA. Translation: ACT51254.1 .
    RefSeqi YP_003051781.1. NC_012969.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 582744.Msip34_2012.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACT51254 ; ACT51254 ; Msip34_2012 .
    GeneIDi 8173066.
    KEGGi mei:Msip34_2012.
    PATRICi 22619042. VBIMetSp110381_2003.

    Phylogenomic databases

    eggNOGi COG1825.
    KOi K02897.
    OMAi IPVHFIN.
    OrthoDBi EOG6SZ1PC.

    Enzyme and pathway databases

    BioCyci MGLU582744:GHXQ-2056-MONOMER.

    Family and domain databases

    Gene3Di 2.170.120.20. 1 hit.
    2.40.240.10. 1 hit.
    HAMAPi MF_01334. Ribosomal_L25_CTC.
    MF_01336. Ribosomal_L25.
    InterProi IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020057. Ribosomal_L25_b-dom.
    IPR001021. Ribosomal_L25_long.
    IPR020055. Ribosomal_L25_short.
    [Graphical view ]
    Pfami PF14693. Ribosomal_TL5_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50715. SSF50715. 1 hit.
    TIGRFAMsi TIGR00731. ctc_TL5. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome of Methylovorus sp. SIP3-4."
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Kayluzhnaya M., Chistoserdova L.
      Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SIP3-4Imported.

    Entry informationi

    Entry nameiC6X7S7_METGS
    AccessioniPrimary (citable) accession number: C6X7S7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 22, 2009
    Last sequence update: September 22, 2009
    Last modified: October 1, 2014
    This is version 37 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3