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C6X7S7

- C6X7S7_METGS

UniProt

C6X7S7 - C6X7S7_METGS

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Protein
50S ribosomal protein L25
Gene
rplY, ctc, Msip34_2012
Organism
Methylovorus glucosetrophus (strain SIP3-4)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance By similarity.UniRule annotationSAAS annotations

GO - Molecular functioni

  1. 5S rRNA binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotationSAAS annotations

Keywords - Ligandi

RNA-binding, rRNA-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciMGLU582744:GHXQ-2056-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L25UniRule annotation
Alternative name(s):
General stress protein CTC
Gene namesi
Name:rplYUniRule annotation
Synonyms:ctcUniRule annotation
Ordered Locus Names:Msip34_2012Imported
OrganismiMethylovorus glucosetrophus (strain SIP3-4)Imported
Taxonomic identifieri582744 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaMethylophilalesMethylophilaceaeMethylovorus
ProteomesiUP000002743: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18 By similarity.UniRule annotationSAAS annotations

Protein-protein interaction databases

STRINGi582744.Msip34_2012.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1825.
KOiK02897.
OMAiIPVHFIN.
OrthoDBiEOG6SZ1PC.

Family and domain databases

Gene3Di2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPiMF_01334. Ribosomal_L25_CTC.
MF_01336. Ribosomal_L25.
InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
IPR020055. Ribosomal_L25_short.
[Graphical view]
PfamiPF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view]
SUPFAMiSSF50715. SSF50715. 1 hit.
TIGRFAMsiTIGR00731. ctc_TL5. 1 hit.

Sequencei

Sequence statusi: Complete.

C6X7S7-1 [UniParc]FASTAAdd to Basket

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MQIEITAVKR ENQGTGASRR LRRAGKVPGI VYGASKDAVS VEFDHKALFL    50
EFRHEAFHAS ILTLNLDGKK EQVVLRDYQM HPVRNTIQHI DFQRVSATEK 100
LHVKVPLHFI NQDIAPGVKL SGGVVTHILT EADVSCLPKD LPEFIEVDLA 150
TLEAGHSIHL SQIKLPKGVE FVQLAHENDA AVASISVPRG GAAAEEETAD 200
APAAE 205
Length:205
Mass (Da):22,360
Last modified:September 22, 2009 - v1
Checksum:i28FC76ADAF982795
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001674 Genomic DNA. Translation: ACT51254.1.
RefSeqiYP_003051781.1. NC_012969.1.

Genome annotation databases

EnsemblBacteriaiACT51254; ACT51254; Msip34_2012.
GeneIDi8173066.
KEGGimei:Msip34_2012.
PATRICi22619042. VBIMetSp110381_2003.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001674 Genomic DNA. Translation: ACT51254.1 .
RefSeqi YP_003051781.1. NC_012969.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 582744.Msip34_2012.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACT51254 ; ACT51254 ; Msip34_2012 .
GeneIDi 8173066.
KEGGi mei:Msip34_2012.
PATRICi 22619042. VBIMetSp110381_2003.

Phylogenomic databases

eggNOGi COG1825.
KOi K02897.
OMAi IPVHFIN.
OrthoDBi EOG6SZ1PC.

Enzyme and pathway databases

BioCyci MGLU582744:GHXQ-2056-MONOMER.

Family and domain databases

Gene3Di 2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPi MF_01334. Ribosomal_L25_CTC.
MF_01336. Ribosomal_L25.
InterProi IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
IPR020055. Ribosomal_L25_short.
[Graphical view ]
Pfami PF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view ]
SUPFAMi SSF50715. SSF50715. 1 hit.
TIGRFAMsi TIGR00731. ctc_TL5. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome of Methylovorus sp. SIP3-4."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Kayluzhnaya M., Chistoserdova L.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SIP3-4.

Entry informationi

Entry nameiC6X7S7_METGS
AccessioniPrimary (citable) accession number: C6X7S7
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: September 3, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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