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Protein

50S ribosomal protein L25

Gene

rplY

Organism
Methylovorus glucosetrophus (strain SIP3-4)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotationSAAS annotation, RNA-binding, rRNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L25UniRule annotationSAAS annotation
Alternative name(s):
General stress protein CTCUniRule annotationSAAS annotation
Gene namesi
Name:rplYUniRule annotation
Synonyms:ctcUniRule annotation
Ordered Locus Names:Msip34_2012Imported
OrganismiMethylovorus glucosetrophus (strain SIP3-4)Imported
Taxonomic identifieri582744 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaNitrosomonadalesMethylophilaceaeMethylovorus
Proteomesi
  • UP000002743 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.UniRule annotationSAAS annotation

Protein-protein interaction databases

STRINGi582744.Msip34_2012.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini100 – 189Ribosomal_TL5_CInterPro annotationAdd BLAST90

Sequence similaritiesi

Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105KW6. Bacteria.
COG1825. LUCA.
KOiK02897.
OMAiGDSIHIS.
OrthoDBiPOG091H03T9.

Family and domain databases

CDDicd00495. Ribosomal_L25_TL5_CTC. 1 hit.
Gene3Di2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPiMF_01336. Ribosomal_L25. 1 hit.
MF_01334. Ribosomal_L25_CTC. 1 hit.
InterProiView protein in InterPro
IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR029751. Ribosomal_L25.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
IPR020055. Ribosomal_L25_short.
PfamiView protein in Pfam
PF01386. Ribosomal_L25p. 1 hit.
PF14693. Ribosomal_TL5_C. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD012503. Ribosomal_L25. 1 hit.
SUPFAMiSSF50715. SSF50715. 1 hit.
TIGRFAMsiTIGR00731. bL25_bact_ctc. 1 hit.

Sequencei

Sequence statusi: Complete.

C6X7S7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQIEITAVKR ENQGTGASRR LRRAGKVPGI VYGASKDAVS VEFDHKALFL
60 70 80 90 100
EFRHEAFHAS ILTLNLDGKK EQVVLRDYQM HPVRNTIQHI DFQRVSATEK
110 120 130 140 150
LHVKVPLHFI NQDIAPGVKL SGGVVTHILT EADVSCLPKD LPEFIEVDLA
160 170 180 190 200
TLEAGHSIHL SQIKLPKGVE FVQLAHENDA AVASISVPRG GAAAEEETAD

APAAE
Length:205
Mass (Da):22,360
Last modified:September 22, 2009 - v1
Checksum:i28FC76ADAF982795
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001674 Genomic DNA. Translation: ACT51254.1.
RefSeqiWP_013442810.1. NC_012969.1.

Genome annotation databases

EnsemblBacteriaiACT51254; ACT51254; Msip34_2012.
KEGGimei:Msip34_2012.

Similar proteinsi

Entry informationi

Entry nameiC6X7S7_METGS
AccessioniPrimary (citable) accession number: C6X7S7
Entry historyiIntegrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: August 30, 2017
This is version 61 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported