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C6X4K9

- C6X4K9_FLAB3

UniProt

C6X4K9 - C6X4K9_FLAB3

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

FIC_00895

Organism
Flavobacteriaceae bacterium (strain 3519-10)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciFBAC531844:GHFZ-895-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:FIC_00895Imported
OrganismiFlavobacteriaceae bacterium (strain 3519-10)Imported
Taxonomic identifieri531844 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceae
ProteomesiUP000001512: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi531844.FIC_00895.

Structurei

3D structure databases

ProteinModelPortaliC6X4K9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6X4K9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MALEQYRNKR SEHKTPEPFG GKPSGKELKF VVQKHHASHL HYDFRLEMDG
60 70 80 90 100
VLKSWAVPKG PSLDPKVKRL AMMVEDHPYD YRNFEGSIPK GQYGGGTVIV
110 120 130 140 150
WDEGTYEHDD ASESVKKQEK SLLADLKSGK LKFRLNGHKL KGEFALVKAY
160 170 180 190 200
GRGEDSWLLM KLNDEFATAE DITLMDESVI SNKTIDEMAE APDKIYGQKS
210 220 230 240 250
EKKKPAISKK ATPKKSAKTK NAQIAEVIEE PTADISKILK AAPQQKFYTS
260 270 280 290 300
VEPMLATLVD QPFDSDEWIY EVKWDGYRAV AFMNEGEVEM KSRNDKSFNE
310 320 330 340 350
KFYPIYDELK KMNINAILDG EVVVLGTEGK ANFGALQNWR SESDGDLVFY
360 370 380 390 400
VFDLLWYEGK DLKSLPLTTR KQILDEILPK SETVMKSEVF ETSGIEFLEA
410 420 430 440 450
AKKMDLEGIM AKRKDSRYHI KNRTKDWLKI KANKRQEVVI GGYTLNDDSR
460 470 480 490 500
KLFSSLLVGV YEGTKLVYTG KVGTGFNAKC QREMMDMFAP LVTDKPPFDK
510 520 530 540 550
EPDVNKPSRF RPDPPHATVT WLKPKLLCEV SFTELTTDGI MRHPSFQGMR
560 570 580 590 600
TDKSAKTVTL ETEQPVAEIV KDDTMIISTR KKADRKTLLN PKDKSQVKKV
610 620 630 640 650
NGHELKFTNL DKIFWPDEKL TKRDLINYYY QVAPYILPYL KGRPQSMNRY
660 670 680 690 700
PDGIEGESFY FKDVTGKAPD WAETLGYVSE SDGRERRYLV GKDEATLLFM
710 720 730 740 750
ANLGCIEMNP WNSTIKKPDH PTFCIIDLDP DENTFDQVIE TAQVTKQLLD
760 770 780 790 800
SMGAPSYCKT SGSTGLHIYI PLGNKYTYEQ SKEFARALVT LVHQELPEIT
810 820 830 840 850
SIERIIKKRK GKMYLDFLQN RPHATIAAAY SVRPKPGATV SMPLHWDEVK
860 870 880 890
KGLKMKDFTM QNALERIKSE GDIFKPVLGK GIDLEKVLRK FEESRK
Length:896
Mass (Da):102,273
Last modified:September 22, 2009 - v1
Checksum:i4527048AAD7BBA87
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001673 Genomic DNA. Translation: ACU07347.1.
RefSeqiWP_012782493.1. NC_013062.1.
YP_003095409.1. NC_013062.1.

Genome annotation databases

EnsemblBacteriaiACU07347; ACU07347; FIC_00895.
GeneIDi8256319.
KEGGifba:FIC_00895.
PATRICi21890804. VBIFlaBac12467_0883.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001673 Genomic DNA. Translation: ACU07347.1 .
RefSeqi WP_012782493.1. NC_013062.1.
YP_003095409.1. NC_013062.1.

3D structure databases

ProteinModelPortali C6X4K9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 531844.FIC_00895.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACU07347 ; ACU07347 ; FIC_00895 .
GeneIDi 8256319.
KEGGi fba:FIC_00895.
PATRICi 21890804. VBIFlaBac12467_0883.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci FBAC531844:GHFZ-895-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "A bacterial ice-binding protein from the Vostok ice core."
    Raymond J.A., Christner B.C., Schuster S.C.
    Extremophiles 12:713-717(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 3519-10Imported.

Entry informationi

Entry nameiC6X4K9_FLAB3
AccessioniPrimary (citable) accession number: C6X4K9
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: October 1, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3