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C6X4K9 (C6X4K9_FLAB3) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP-dependent DNA ligase EMBL ACU07347.1
EC=6.5.1.1 EMBL ACU07347.1
Gene names
Ordered Locus Names:FIC_00895
OrganismFlavobacteriaceae bacterium (strain 3519-10) [Complete proteome] [HAMAP]
Taxonomic identifier531844 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae ›

Protein attributes

Sequence length896 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACU07347.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C6X4K9 [UniParc].

Last modified September 22, 2009. Version 1.
Checksum: 4527048AAD7BBA87

FASTA896102,273
        10         20         30         40         50         60 
MALEQYRNKR SEHKTPEPFG GKPSGKELKF VVQKHHASHL HYDFRLEMDG VLKSWAVPKG 

        70         80         90        100        110        120 
PSLDPKVKRL AMMVEDHPYD YRNFEGSIPK GQYGGGTVIV WDEGTYEHDD ASESVKKQEK 

       130        140        150        160        170        180 
SLLADLKSGK LKFRLNGHKL KGEFALVKAY GRGEDSWLLM KLNDEFATAE DITLMDESVI 

       190        200        210        220        230        240 
SNKTIDEMAE APDKIYGQKS EKKKPAISKK ATPKKSAKTK NAQIAEVIEE PTADISKILK 

       250        260        270        280        290        300 
AAPQQKFYTS VEPMLATLVD QPFDSDEWIY EVKWDGYRAV AFMNEGEVEM KSRNDKSFNE 

       310        320        330        340        350        360 
KFYPIYDELK KMNINAILDG EVVVLGTEGK ANFGALQNWR SESDGDLVFY VFDLLWYEGK 

       370        380        390        400        410        420 
DLKSLPLTTR KQILDEILPK SETVMKSEVF ETSGIEFLEA AKKMDLEGIM AKRKDSRYHI 

       430        440        450        460        470        480 
KNRTKDWLKI KANKRQEVVI GGYTLNDDSR KLFSSLLVGV YEGTKLVYTG KVGTGFNAKC 

       490        500        510        520        530        540 
QREMMDMFAP LVTDKPPFDK EPDVNKPSRF RPDPPHATVT WLKPKLLCEV SFTELTTDGI 

       550        560        570        580        590        600 
MRHPSFQGMR TDKSAKTVTL ETEQPVAEIV KDDTMIISTR KKADRKTLLN PKDKSQVKKV 

       610        620        630        640        650        660 
NGHELKFTNL DKIFWPDEKL TKRDLINYYY QVAPYILPYL KGRPQSMNRY PDGIEGESFY 

       670        680        690        700        710        720 
FKDVTGKAPD WAETLGYVSE SDGRERRYLV GKDEATLLFM ANLGCIEMNP WNSTIKKPDH 

       730        740        750        760        770        780 
PTFCIIDLDP DENTFDQVIE TAQVTKQLLD SMGAPSYCKT SGSTGLHIYI PLGNKYTYEQ 

       790        800        810        820        830        840 
SKEFARALVT LVHQELPEIT SIERIIKKRK GKMYLDFLQN RPHATIAAAY SVRPKPGATV 

       850        860        870        880        890 
SMPLHWDEVK KGLKMKDFTM QNALERIKSE GDIFKPVLGK GIDLEKVLRK FEESRK

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References

[1]"A bacterial ice-binding protein from the Vostok ice core."
Raymond J.A., Christner B.C., Schuster S.C.
Extremophiles 12:713-717(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 3519-10.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001673 Genomic DNA. Translation: ACU07347.1.
RefSeqYP_003095409.1. NC_013062.1.

3D structure databases

ProteinModelPortalC6X4K9.
ModBaseSearch...

Protein-protein interaction databases

STRING531844.FIC_00895.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACU07347; ACU07347; FIC_00895.
GeneID8256319.
KEGGfba:FIC_00895.
PATRIC21890804. VBIFlaBac12467_0883.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALAMMVED.
ProtClustDBCLSK2552445.

Enzyme and pathway databases

BioCycFBAC531844:GHFZ-895-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6X4K9_FLAB3
AccessionPrimary (citable) accession number: C6X4K9
Entry history
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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