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C6X4K9

- C6X4K9_FLAB3

UniProt

C6X4K9 - C6X4K9_FLAB3

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

FIC_00895

Organism
Flavobacteriaceae bacterium (strain 3519-10)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 34 (01 Oct 2014)
      Sequence version 1 (22 Sep 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciFBAC531844:GHFZ-895-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:FIC_00895Imported
    OrganismiFlavobacteriaceae bacterium (strain 3519-10)Imported
    Taxonomic identifieri531844 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceae
    ProteomesiUP000001512: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi531844.FIC_00895.

    Structurei

    3D structure databases

    ProteinModelPortaliC6X4K9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C6X4K9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MALEQYRNKR SEHKTPEPFG GKPSGKELKF VVQKHHASHL HYDFRLEMDG    50
    VLKSWAVPKG PSLDPKVKRL AMMVEDHPYD YRNFEGSIPK GQYGGGTVIV 100
    WDEGTYEHDD ASESVKKQEK SLLADLKSGK LKFRLNGHKL KGEFALVKAY 150
    GRGEDSWLLM KLNDEFATAE DITLMDESVI SNKTIDEMAE APDKIYGQKS 200
    EKKKPAISKK ATPKKSAKTK NAQIAEVIEE PTADISKILK AAPQQKFYTS 250
    VEPMLATLVD QPFDSDEWIY EVKWDGYRAV AFMNEGEVEM KSRNDKSFNE 300
    KFYPIYDELK KMNINAILDG EVVVLGTEGK ANFGALQNWR SESDGDLVFY 350
    VFDLLWYEGK DLKSLPLTTR KQILDEILPK SETVMKSEVF ETSGIEFLEA 400
    AKKMDLEGIM AKRKDSRYHI KNRTKDWLKI KANKRQEVVI GGYTLNDDSR 450
    KLFSSLLVGV YEGTKLVYTG KVGTGFNAKC QREMMDMFAP LVTDKPPFDK 500
    EPDVNKPSRF RPDPPHATVT WLKPKLLCEV SFTELTTDGI MRHPSFQGMR 550
    TDKSAKTVTL ETEQPVAEIV KDDTMIISTR KKADRKTLLN PKDKSQVKKV 600
    NGHELKFTNL DKIFWPDEKL TKRDLINYYY QVAPYILPYL KGRPQSMNRY 650
    PDGIEGESFY FKDVTGKAPD WAETLGYVSE SDGRERRYLV GKDEATLLFM 700
    ANLGCIEMNP WNSTIKKPDH PTFCIIDLDP DENTFDQVIE TAQVTKQLLD 750
    SMGAPSYCKT SGSTGLHIYI PLGNKYTYEQ SKEFARALVT LVHQELPEIT 800
    SIERIIKKRK GKMYLDFLQN RPHATIAAAY SVRPKPGATV SMPLHWDEVK 850
    KGLKMKDFTM QNALERIKSE GDIFKPVLGK GIDLEKVLRK FEESRK 896
    Length:896
    Mass (Da):102,273
    Last modified:September 22, 2009 - v1
    Checksum:i4527048AAD7BBA87
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001673 Genomic DNA. Translation: ACU07347.1.
    RefSeqiWP_012782493.1. NC_013062.1.
    YP_003095409.1. NC_013062.1.

    Genome annotation databases

    EnsemblBacteriaiACU07347; ACU07347; FIC_00895.
    GeneIDi8256319.
    KEGGifba:FIC_00895.
    PATRICi21890804. VBIFlaBac12467_0883.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001673 Genomic DNA. Translation: ACU07347.1 .
    RefSeqi WP_012782493.1. NC_013062.1.
    YP_003095409.1. NC_013062.1.

    3D structure databases

    ProteinModelPortali C6X4K9.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 531844.FIC_00895.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACU07347 ; ACU07347 ; FIC_00895 .
    GeneIDi 8256319.
    KEGGi fba:FIC_00895.
    PATRICi 21890804. VBIFlaBac12467_0883.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci FBAC531844:GHFZ-895-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "A bacterial ice-binding protein from the Vostok ice core."
      Raymond J.A., Christner B.C., Schuster S.C.
      Extremophiles 12:713-717(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 3519-10Imported.

    Entry informationi

    Entry nameiC6X4K9_FLAB3
    AccessioniPrimary (citable) accession number: C6X4K9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 22, 2009
    Last sequence update: September 22, 2009
    Last modified: October 1, 2014
    This is version 34 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3