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Protein
Submitted name:

Periplasmic alpha-amylase

Gene

FIC_00730

Organism
Flavobacteriaceae bacterium (strain 3519-10)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Enzyme and pathway databases

BioCyciFBAC531844:GHFZ-730-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Periplasmic alpha-amylaseImported (EC:3.2.1.1Imported)
Gene namesi
Ordered Locus Names:FIC_00730Imported
OrganismiFlavobacteriaceae bacterium (strain 3519-10)Imported
Taxonomic identifieri531844 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceae
ProteomesiUP000001512 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi531844.FIC_00730.

Structurei

3D structure databases

ProteinModelPortaliC6X447.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OMAiLRSFMNW.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

C6X447-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKIFLLAGF AMLTSCATLQ NNSKPNFTWE GANMYFLLTD RFANGDKNND
60 70 80 90 100
VNFGRTEKAA VLRGFEGGDL RGIIQKIDEN YFTDLGINAI WMTPVVEQIH
110 120 130 140 150
GATDEGTGDT YGFHGYWAKD WTALDPNFGT KADLKELVEK AHAKGIRIVL
160 170 180 190 200
DAVVNHTGPV TATDPVYPAS WVRTSPQCQY NNYQNTTACT LVANLPDVIT
210 220 230 240 250
ESDAAAELPQ MLVDKWRSEG RYETEMKSLD EFFARTGYPK APKYYIMKWL
260 270 280 290 300
ADYVQEFGID GYRVDTVKHT NEDVWKDFQL ICQEAFDIYK TENPAKVLDN
310 320 330 340 350
NLFFMVGEVY GYGISQKQDY NFGDKKVNYY QNGFKSLINF DFKGDANKTY
360 370 380 390 400
DELFSDYSKL LHSDLNGKTV MNYLTSHDDG SPFDKDRKRT YESATKLLLA
410 420 430 440 450
PGISQVYYGD ETARDLTIEG TTGDATLRSN MNWSDVKYNP GTKKLLEHYQ
460 470 480 490 500
KLGKFRANHP AVGAGVHQVV SAAPYWFTRT YQNDVVLVGL DLNSGLKTVS
510 520 530 540
VTGIFEGGTK VRDAYSGKTS KVENGRISFD TEFSIVLVEK I
Length:541
Mass (Da):60,963
Last modified:September 22, 2009 - v1
Checksum:i7A7CDF7320FF2221
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001673 Genomic DNA. Translation: ACU07185.1.
RefSeqiWP_012782331.1. NC_013062.1.
YP_003095247.1. NC_013062.1.

Genome annotation databases

EnsemblBacteriaiACU07185; ACU07185; FIC_00730.
KEGGifba:FIC_00730.
PATRICi21890480. VBIFlaBac12467_0724.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001673 Genomic DNA. Translation: ACU07185.1.
RefSeqiWP_012782331.1. NC_013062.1.
YP_003095247.1. NC_013062.1.

3D structure databases

ProteinModelPortaliC6X447.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi531844.FIC_00730.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU07185; ACU07185; FIC_00730.
KEGGifba:FIC_00730.
PATRICi21890480. VBIFlaBac12467_0724.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OMAiLRSFMNW.
OrthoDBiEOG65QWH3.

Enzyme and pathway databases

BioCyciFBAC531844:GHFZ-730-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "A bacterial ice-binding protein from the Vostok ice core."
    Raymond J.A., Christner B.C., Schuster S.C.
    Extremophiles 12:713-717(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 3519-10Imported.

Entry informationi

Entry nameiC6X447_FLAB3
AccessioniPrimary (citable) accession number: C6X447
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: April 1, 2015
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.