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Protein
Submitted name:

Cytoplasmic alpha-amylase

Gene

FIC_02202

Organism
Flavobacteriaceae bacterium (strain 3519-10)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei231 – 2311NucleophileUniRule annotation
Active sitei261 – 2611Proton donorUniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Enzyme and pathway databases

BioCyciFBAC531844:GHFZ-2202-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Cytoplasmic alpha-amylaseImported (EC:3.2.1.1Imported)
Gene namesi
Ordered Locus Names:FIC_02202Imported
OrganismiFlavobacteriaceae bacterium (strain 3519-10)Imported
Taxonomic identifieri531844 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceae
ProteomesiUP000001512: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi531844.FIC_02202.

Structurei

3D structure databases

ProteinModelPortaliC6X2H4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000094847.
KOiK01176.
OMAiFFHWYYP.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015237. Alpha-amylase_C_pro.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

C6X2H4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNPTMIQFFH WYSDGDAQLY EQVKNSADYL RELGISSVWL PPAYKSAGGG
60 70 80 90 100
FSVGYDPYDL YDLGEFDQKG TVSTKYGNRQ QLVEACRSLQ QNGISVIADI
110 120 130 140 150
VLNHKAGGDE KEIFHAVKVD PENRQQNISE PFEIESYTKF TFPGRGDQYS
160 170 180 190 200
EFKWNFQCFS GVDYAEGHDG IFQIIHDHGD GWEEMIDDEK GNYDFLMYND
210 220 230 240 250
IEHRNPFVRE ELHTWGKWYH DQIFFDGVRL DAVKHQTPEF YKGWLYTLRA
260 270 280 290 300
DTGKNIFAVG EYWAPGELHL LQKYIDATEG SMSLFDSSLQ HNFHQASNQG
310 320 330 340 350
ADYDLRQIFD ETLTLANPLL SVTVVDNHDT QPLQALEAPV EYWFKPLAYA
360 370 380 390 400
LILLRENGYP CVFYPDLFGA HYTDKDAEGN DREIFLNKVE KIEELLKARQ
410 420 430 440 450
LFAYGPQRDY WEDANCLGWV REGDGEHPGC AVVLSNKDAY TKPMEMGLTY
460 470 480
AGQNFYDYLG WFPEQVTIEE NGWGNFPVPA GNVSVWVPA
Length:489
Mass (Da):56,205
Last modified:September 22, 2009 - v1
Checksum:i34169898DAE87FFB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001673 Genomic DNA. Translation: ACU08637.1.
RefSeqiWP_015806921.1. NC_013062.1.
YP_003096699.1. NC_013062.1.

Genome annotation databases

EnsemblBacteriaiACU08637; ACU08637; FIC_02202.
GeneIDi8257626.
KEGGifba:FIC_02202.
PATRICi21893442. VBIFlaBac12467_2185.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001673 Genomic DNA. Translation: ACU08637.1.
RefSeqiWP_015806921.1. NC_013062.1.
YP_003096699.1. NC_013062.1.

3D structure databases

ProteinModelPortaliC6X2H4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi531844.FIC_02202.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU08637; ACU08637; FIC_02202.
GeneIDi8257626.
KEGGifba:FIC_02202.
PATRICi21893442. VBIFlaBac12467_2185.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000094847.
KOiK01176.
OMAiFFHWYYP.
OrthoDBiEOG65QWH3.

Enzyme and pathway databases

BioCyciFBAC531844:GHFZ-2202-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015237. Alpha-amylase_C_pro.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "A bacterial ice-binding protein from the Vostok ice core."
    Raymond J.A., Christner B.C., Schuster S.C.
    Extremophiles 12:713-717(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 3519-10Imported.

Entry informationi

Entry nameiC6X2H4_FLAB3
AccessioniPrimary (citable) accession number: C6X2H4
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: February 4, 2015
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.