C6X1D5 (C6X1D5_FLAB3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase EMBL ACU08248.1
EC=6.5.1.1 EMBL ACU08248.1

Gene names

Ordered Locus Names:

FIC_01805

Organism

Flavobacteriaceae bacterium (strain 3519-10) [Complete proteome] [HAMAP]

Taxonomic identifier

531844 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › unclassified Flavobacteriaceae

Protein attributes

Sequence length	526 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACU08248.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6X1D5 [UniParc]. Last modified September 22, 2009. Version 1. Checksum: 43528CEF2BDD3336	FASTA	526	60,699
	10 20 30 40 50 60 MKHFAELISS LESSNKTTAK VDAMVHYLRT APENDKLWFL ALFTGKRPKR PVNTNLLRQW 70 80 90 100 110 120 ALEIIQLPEW LFLESYSSVG DLGETISLIL PPPQNDISKS LSQWMDELGD LAHKTEAEKK 130 140 150 160 170 180 AYVTESWNGL DYTERFIFNK LIGGSFRIGV SKKLLISALS KYSEIDSSQL MHSIMGKWDI 190 200 210 220 230 240 NEINFEDLIA GININPDNSK PYPFCLAYPL EKETDELGDP AEWQAEYKWD GIRGQLIRRN 250 260 270 280 290 300 DEVFIWSRGE ELVTPQFPEI VSALEKMTGN FVIDGEILAV TEKGVLNFNE LQKRLNRKTI 310 320 330 340 350 360 SAKMLKEIPV KVFAYDILER DDEDLRGKPL TYRRKILEEL IHSQAPENIT LSDIVPFQKW 370 380 390 400 410 420 EDLVEVRDNS RLNNSEGLML KHKESLYHSG RKKGDWWKWK VDPLTIDAVL IYAQKGSGRR 430 440 450 460 470 480 SGYYTDYTFA VKKEDQLVTV AKAYSGLTDK EIMEVSRFVT KNSLEKFGPV RTVKPELVFE 490 500 510 520 IAFEGIGLSN RHKSGVALRF PRILRWRRDK KADEIDDIEE VKKLIR

References

[1]	"A bacterial ice-binding protein from the Vostok ice core." Raymond J.A., Christner B.C., Schuster S.C. Extremophiles 12:713-717(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 3519-10.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001673 Genomic DNA. Translation: ACU08248.1.
RefSeq	YP_003096310.1. NC_013062.1.
3D structure databases
ProteinModelPortal	C6X1D5.
ModBase	Search...
Protein-protein interaction databases
STRING	531844.FIC_01805.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACU08248; ACU08248; FIC_01805.
GeneID	8257229.
KEGG	fba:FIC_01805.
PATRIC	21892644. VBIFlaBac12467_1794.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
Enzyme and pathway databases
BioCyc	FBAC531844:GHFZ-1805-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6X1D5_FLAB3

Accession

Primary (citable) accession number: C6X1D5

Entry history

Integrated into UniProtKB/TrEMBL:	September 22, 2009
Last sequence update:	September 22, 2009
Last modified:	May 1, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)