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C6X1D5

- C6X1D5_FLAB3

UniProt

C6X1D5 - C6X1D5_FLAB3

Protein
Submitted name:

DNA ligase

Gene

FIC_01805

Organism
Flavobacteriaceae bacterium (strain 3519-10)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 34 (01 Oct 2014)
      Sequence version 1 (22 Sep 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciFBAC531844:GHFZ-1805-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:FIC_01805Imported
    OrganismiFlavobacteriaceae bacterium (strain 3519-10)Imported
    Taxonomic identifieri531844 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceae
    ProteomesiUP000001512: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi531844.FIC_01805.

    Structurei

    3D structure databases

    ProteinModelPortaliC6X1D5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiNRHKSGV.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C6X1D5-1 [UniParc]FASTAAdd to Basket

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    MKHFAELISS LESSNKTTAK VDAMVHYLRT APENDKLWFL ALFTGKRPKR    50
    PVNTNLLRQW ALEIIQLPEW LFLESYSSVG DLGETISLIL PPPQNDISKS 100
    LSQWMDELGD LAHKTEAEKK AYVTESWNGL DYTERFIFNK LIGGSFRIGV 150
    SKKLLISALS KYSEIDSSQL MHSIMGKWDI NEINFEDLIA GININPDNSK 200
    PYPFCLAYPL EKETDELGDP AEWQAEYKWD GIRGQLIRRN DEVFIWSRGE 250
    ELVTPQFPEI VSALEKMTGN FVIDGEILAV TEKGVLNFNE LQKRLNRKTI 300
    SAKMLKEIPV KVFAYDILER DDEDLRGKPL TYRRKILEEL IHSQAPENIT 350
    LSDIVPFQKW EDLVEVRDNS RLNNSEGLML KHKESLYHSG RKKGDWWKWK 400
    VDPLTIDAVL IYAQKGSGRR SGYYTDYTFA VKKEDQLVTV AKAYSGLTDK 450
    EIMEVSRFVT KNSLEKFGPV RTVKPELVFE IAFEGIGLSN RHKSGVALRF 500
    PRILRWRRDK KADEIDDIEE VKKLIR 526
    Length:526
    Mass (Da):60,699
    Last modified:September 22, 2009 - v1
    Checksum:i43528CEF2BDD3336
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001673 Genomic DNA. Translation: ACU08248.1.
    RefSeqiWP_015806533.1. NC_013062.1.
    YP_003096310.1. NC_013062.1.

    Genome annotation databases

    EnsemblBacteriaiACU08248; ACU08248; FIC_01805.
    GeneIDi8257229.
    KEGGifba:FIC_01805.
    PATRICi21892644. VBIFlaBac12467_1794.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001673 Genomic DNA. Translation: ACU08248.1 .
    RefSeqi WP_015806533.1. NC_013062.1.
    YP_003096310.1. NC_013062.1.

    3D structure databases

    ProteinModelPortali C6X1D5.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 531844.FIC_01805.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACU08248 ; ACU08248 ; FIC_01805 .
    GeneIDi 8257229.
    KEGGi fba:FIC_01805.
    PATRICi 21892644. VBIFlaBac12467_1794.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi NRHKSGV.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci FBAC531844:GHFZ-1805-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "A bacterial ice-binding protein from the Vostok ice core."
      Raymond J.A., Christner B.C., Schuster S.C.
      Extremophiles 12:713-717(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 3519-10Imported.

    Entry informationi

    Entry nameiC6X1D5_FLAB3
    AccessioniPrimary (citable) accession number: C6X1D5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 22, 2009
    Last sequence update: September 22, 2009
    Last modified: October 1, 2014
    This is version 34 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3