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Protein
Submitted name:

DNA ligase

Gene

FIC_01805

Organism
Flavobacteriaceae bacterium (strain 3519-10)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciFBAC531844:GHFZ-1805-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:FIC_01805Imported
OrganismiFlavobacteriaceae bacterium (strain 3519-10)Imported
Taxonomic identifieri531844 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceae
ProteomesiUP000001512: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi531844.FIC_01805.

Structurei

3D structure databases

ProteinModelPortaliC6X1D5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6X1D5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKHFAELISS LESSNKTTAK VDAMVHYLRT APENDKLWFL ALFTGKRPKR
60 70 80 90 100
PVNTNLLRQW ALEIIQLPEW LFLESYSSVG DLGETISLIL PPPQNDISKS
110 120 130 140 150
LSQWMDELGD LAHKTEAEKK AYVTESWNGL DYTERFIFNK LIGGSFRIGV
160 170 180 190 200
SKKLLISALS KYSEIDSSQL MHSIMGKWDI NEINFEDLIA GININPDNSK
210 220 230 240 250
PYPFCLAYPL EKETDELGDP AEWQAEYKWD GIRGQLIRRN DEVFIWSRGE
260 270 280 290 300
ELVTPQFPEI VSALEKMTGN FVIDGEILAV TEKGVLNFNE LQKRLNRKTI
310 320 330 340 350
SAKMLKEIPV KVFAYDILER DDEDLRGKPL TYRRKILEEL IHSQAPENIT
360 370 380 390 400
LSDIVPFQKW EDLVEVRDNS RLNNSEGLML KHKESLYHSG RKKGDWWKWK
410 420 430 440 450
VDPLTIDAVL IYAQKGSGRR SGYYTDYTFA VKKEDQLVTV AKAYSGLTDK
460 470 480 490 500
EIMEVSRFVT KNSLEKFGPV RTVKPELVFE IAFEGIGLSN RHKSGVALRF
510 520
PRILRWRRDK KADEIDDIEE VKKLIR
Length:526
Mass (Da):60,699
Last modified:September 22, 2009 - v1
Checksum:i43528CEF2BDD3336
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001673 Genomic DNA. Translation: ACU08248.1.
RefSeqiWP_015806533.1. NC_013062.1.
YP_003096310.1. NC_013062.1.

Genome annotation databases

EnsemblBacteriaiACU08248; ACU08248; FIC_01805.
GeneIDi8257229.
KEGGifba:FIC_01805.
PATRICi21892644. VBIFlaBac12467_1794.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001673 Genomic DNA. Translation: ACU08248.1.
RefSeqiWP_015806533.1. NC_013062.1.
YP_003096310.1. NC_013062.1.

3D structure databases

ProteinModelPortaliC6X1D5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi531844.FIC_01805.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU08248; ACU08248; FIC_01805.
GeneIDi8257229.
KEGGifba:FIC_01805.
PATRICi21892644. VBIFlaBac12467_1794.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciFBAC531844:GHFZ-1805-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "A bacterial ice-binding protein from the Vostok ice core."
    Raymond J.A., Christner B.C., Schuster S.C.
    Extremophiles 12:713-717(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 3519-10Imported.

Entry informationi

Entry nameiC6X1D5_FLAB3
AccessioniPrimary (citable) accession number: C6X1D5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: March 4, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.