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C6X056 (C6X056_FLAB3) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tuf HAMAP-Rule MF_00118
Ordered Locus Names:FIC_00272 EMBL ACU06741.1
OrganismFlavobacteriaceae bacterium (strain 3519-10) [Complete proteome] [HAMAP] EMBL ACU06741.1
Taxonomic identifier531844 [NCBI]
Taxonomic lineageBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceae

Protein attributes

Sequence length395 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. HAMAP-Rule MF_00118 RuleBase RU000325

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. HAMAP-Rule MF_00118 RuleBase RU000325

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
C6X056 [UniParc].

Last modified September 22, 2009. Version 1.
Checksum: 1B01CFEF9B95FCB8

FASTA39543,078
        10         20         30         40         50         60 
MAKETFNRNK PHLNIGTIGH VDHGKTTLTA AISKVLSDKG YGTARDFSSI DSAPEEKERG 

        70         80         90        100        110        120 
ITINTSHIEY ETETRHYAHV DCPGHADYVK NMVTGAAQMD GAILVVAATD GPMPQTREHI 

       130        140        150        160        170        180 
LLCKQVNVPN VLVFMNKVDM VDDPELLELV ELEVRDLLSS YDYDGDNAPV IQGSALGALN 

       190        200        210        220        230        240 
GEPKWVATVE ELMAAVDSWI ELPVRDQDKP FLMPIEDVFS ITGRGTVATG RIEAGVINSG 

       250        260        270        280        290        300 
EGVDIVGMGD EKLTSTVTGV EMFRKILDRG EAGDNVGLLL RGIEKTDIKR GMVIAKAGSV 

       310        320        330        340        350        360 
KPHKKFNAEV YILSKEEGGR HTPFHNKYRP QFYVRTTDVT GEIFLPEGVE MVMPGDNISI 

       370        380        390 
VVELLQPIAL NVGLRFAIRE GGRTVGAGQV TEILD 

« Hide

References

[1]"A bacterial ice-binding protein from the Vostok ice core."
Raymond J.A., Christner B.C., Schuster S.C.
Extremophiles 12:713-717(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 3519-10 EMBL ACU06741.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001673 Genomic DNA. Translation: ACU06741.1.
RefSeqYP_003094803.1. NC_013062.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING531844.FIC_00272.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACU06741; ACU06741; FIC_00272.
GeneID8255696.
KEGGfba:FIC_00272.
PATRIC21889532. VBIFlaBac12467_0264.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0050.
HOGENOMHOG000229290.
KOK02358.
OMASSYSISH.
OrthoDBEOG6R5C6X.

Enzyme and pathway databases

BioCycFBAC531844:GHFZ-272-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6X056_FLAB3
AccessionPrimary (citable) accession number: C6X056
Entry history
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: April 16, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)