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C6X034 (C6X034_FLAB3) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Arginine--tRNA ligase HAMAP-Rule MF_00123
EC=6.1.1.19 HAMAP-Rule MF_00123
Alternative name(s):
Arginyl-tRNA synthetase HAMAP-Rule MF_00123
Gene names
Name:argS HAMAP-Rule MF_00123
Ordered Locus Names:FIC_00246
OrganismFlavobacteriaceae bacterium (strain 3519-10) [Complete proteome] [HAMAP]
Taxonomic identifier531844 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae ›

Protein attributes

Sequence length595 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP-Rule MF_00123

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00123

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00123.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. HAMAP-Rule MF_00123 RuleBase RU003489

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Motif128 – 13811"HIGH" region By similarity HAMAP-Rule MF_00123

Sequences

Sequence LengthMass (Da)Tools
C6X034 [UniParc].

Last modified September 22, 2009. Version 1.
Checksum: FD852403FF6D9426

FASTA59568,280
        10         20         30         40         50         60 
MITMNIKNII ELKIAEVIQN VFQIDDLNHK HNLSLEVQQN KSGFEGDFSV VTFPLVKIVK 

        70         80         90        100        110        120 
KTPDHVATEL GDALFTQADF VESFNVVNGF LNLKIRNAFF INNFYSAKQN LDQVDAKNQT 

       130        140        150        160        170        180 
VMIEYSSPNT NKPLHLGHIR NNLLGYSVAE ILKADGYNVV KTQIINDRGI HICKSMLAWQ 

       190        200        210        220        230        240 
RYGEGSTPAS TSLKGDKLVG NYYVEFDKTY KKEIAELVAQ GKSEDEAKKE APIIKEAQQM 

       250        260        270        280        290        300 
LLSWEKNDEK VRELWKEMNT WVYAGFDQTY KRLGVDFDQV QYESDTYILG KDIIQQGLLT 

       310        320        330        340        350        360 
GALYRREDGS VWCDLRDEGI DEKLLLRSDG TSVYMTQDLG TAVQRFKDND IQKLIYTVGN 

       370        380        390        400        410        420 
EQDYHFNVLF KILKKLGYSW AENLYHLSYG MVELPEGKMK SREGTVVDAD DLMQEMYETA 

       430        440        450        460        470        480 
KEKAEDLGKL ENLTIEEKEK SYETVGIGAL KYFMLKVDPR KKMLFNPKDS VEFNGNTGPF 

       490        500        510        520        530        540 
IQYTYARIQS LLAKADYQDR KVTEYEMSDS EKDLIMNIAA FKDVISKAAD TLSPALLANY 

       550        560        570        580        590 
IYDLVKSYNS FYQNNPILIQ EDQNMRQFRL ELSDLTAKII KKGLKMLGIE TVDRM

« Hide

References

[1]"A bacterial ice-binding protein from the Vostok ice core."
Raymond J.A., Christner B.C., Schuster S.C.
Extremophiles 12:713-717(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 3519-10.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001673 Genomic DNA. Translation: ACU06719.1.
RefSeqYP_003094781.1. NC_013062.1.

3D structure databases

ProteinModelPortalC6X034.
ModBaseSearch...

Protein-protein interaction databases

STRING531844.FIC_00246.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACU06719; ACU06719; FIC_00246.
GeneID8255670.
KEGGfba:FIC_00246.
PATRIC21889476. VBIFlaBac12467_0240.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0018.
HOGENOMHOG000247211.
KOK01887.
OMACKSMLAW.
ProtClustDBPRK01611.

Enzyme and pathway databases

BioCycFBAC531844:GHFZ-246-MONOMER.

Family and domain databases

Gene3D3.30.1360.70. 1 hit.
3.40.50.620. 1 hit.
HAMAPMF_00123. Arg_tRNA_synth.
InterProIPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-ligase_Ia.
IPR015945. Arg-tRNA-synth_Ia_core.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
PANTHERPTHR11956. PTHR11956. 1 hit.
PfamPF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 1 hit.
[Graphical view]
PRINTSPR01038. TRNASYNTHARG.
SMARTSM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view]
SUPFAMSSF55190. Arg-tRNA-synth_Ic_N. 1 hit.
SSF47323. tRNAsyn_1a_bind. 1 hit.
TIGRFAMsTIGR00456. argS. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6X034_FLAB3
AccessionPrimary (citable) accession number: C6X034
Entry history
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info