C6WE66 (C6WE66_ACTMD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribulokinase HAMAP MF_00520 RuleBase RU003455
EC=2.7.1.16 HAMAP MF_00520 RuleBase RU003455

Gene names

Name:	araB HAMAP MF_00520
Ordered Locus Names:	Amir_1861

Organism

Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) [Complete proteome] [HAMAP]

Taxonomic identifier

446462 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Pseudonocardineae › Actinosynnemataceae › Actinosynnema

Protein attributes

Sequence length	554 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929
Sequence similarities	Belongs to the ribulokinase family. HAMAP MF_00520 RuleBase RU003455

Ontologies

Keywords
Biological process	Arabinose catabolism HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929 Carbohydrate metabolism
Ligand	ATP-binding HAMAP MF_00520 SAAS SAAS005929 Nucleotide-binding
Molecular function	Kinase HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929 EMBL ACU35809.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	L-arabinose catabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ribulokinase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6WE66 [UniParc]. Last modified September 22, 2009. Version 1. Checksum: B517A1168D8E61D9	FASTA	554	58,932
	10 20 30 40 50 60 MANDPLVVGV DFGTLSGRAV VVRVSDGAEL GTAVHEYRHG VLDRTTPGGR ALPPEWALQV 70 80 90 100 110 120 PQDYVDVLRN AIPAAIADAG VDAADVIGVG TDFTACTMVP VNAGGTPLCE LPEFADHPHA 130 140 150 160 170 180 FVKLWKHHAA QGQADRINRL AQERGESWLP RYGGLISSEW EFAKGLQILE EAPDVYAAID 190 200 210 220 230 240 HWVEAADWIV WQLTGTYVRN ACTAGYKGIY QDGGYPSEEF LAALNPGFAD FVSTKLEHPL 250 260 270 280 290 300 GQLGDRAGGL SAEAAAWTGL TEGIAVSVGN VDAHVTAPAA QAVEPGQMVA IMGTSTCHVM 310 320 330 340 350 360 NGDHLAEVPG MCGVVEGGIV PGLWGYEAGQ SGVGDIFGWF VQHQVPASYH ETARERGIST 370 380 390 400 410 420 HELLTELAAE QKIGQHGLVA LDWHSGNRSV LVDHELSGVV VGQTLATRAE DTYRALLEAT 430 440 450 460 470 480 AFGTRVIVDT FTDAGVPVTE LVIAGGLLRN KLLMQIYADV TNLPLSVIGS EQGPALGSAL 490 500 510 520 530 540 HAAVAAGAYP DIRAAALAMG SLLKDVYRPI EANVQAYERL FTEYQELHDY FGRGANEVMH 550 RLKAGRREAL GEES

References

[1]

"Complete genome sequence of Actinosynnema mirum type strain (101)." Land M., Lapidus A., Mayilraj S., Chen F., Copeland A., Glavina del Rio T., Nolan M., Lucas S., Tice H., Cheng J.-F., Chertkov O., Bruce D., Goodwin L., Pitluck S., Rohde M., Goeker M., Pati A., Ivanova N. , Mavromatis K., Chen A., Palaniappan K., Hauser L., Chang Y.-J., Jeffries C.C., Brettin T., Detter J.C., Han C., Chain P., Tindall B.J., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.-P. Stand. Genomic Sci. 1:46-53(2009) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001630 Genomic DNA. Translation: ACU35809.1.
RefSeq	YP_003099655.1. NC_013093.1.
3D structure databases
ProteinModelPortal	C6WE66.
ModBase	Search...
Protein-protein interaction databases
STRING	C6WE66.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	8326046.
GenomeReviews	Gene locus Amir_1861 in contig CP001630_GR.
KEGG	ami:Amir_1861.
PATRIC	20766609. VBIActMir80567_1917.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	NGRRTPD.
ProtClustDB	PRK04123.
Family and domain databases
HAMAP	MF_00520. Ribulokinase. [Tree]
InterPro	IPR000577. Carb_kinase_FGGY. IPR018485. Carb_kinase_FGGY_C. IPR018484. Carb_kinase_FGGY_N. IPR005929. L_ribulokin. [Graphical view]
KO	K00853.
PANTHER	PTHR10196. FGGY_kin. 1 hit.
Pfam	PF02782. FGGY_C. 1 hit. PF00370. FGGY_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR01234. L-ribulokinase. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C6WE66_ACTMD

Accession

Primary (citable) accession number: C6WE66

Entry history

Integrated into UniProtKB/TrEMBL:	September 22, 2009
Last sequence update:	September 22, 2009
Last modified:	December 14, 2011
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)