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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Amir_1579

Organism
Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAMIR446462:GH7R-1619-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Amir_1579Imported
OrganismiActinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971)Imported
Taxonomic identifieri446462 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaPseudonocardialesPseudonocardiaceaeActinosynnema
ProteomesiUP000002213 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi446462.Amir_1579.

Structurei

3D structure databases

ProteinModelPortaliC6WBG0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
OMAiWHANTEP.
OrthoDBiEOG63NMFT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

C6WBG0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPLPLTPPVQ PMLATSADAI PTTSDLLFEP KWDGYRCLVF RDGSEVVLQS
60 70 80 90 100
RGGKPLNRYF PEVEAALRGS ALPDRVVLDG ELVVSLDGRL DFDALTERIH
110 120 130 140 150
PAASRVALLS ERTPAGFVAF DLLALGDEVL LDRPTSDRRA ALEDVITPSG
160 170 180 190 200
ALHLTPCTGD VELARRWFGL FEGAGLDGVV GKAAGGAYLP GKRAMVKVKH
210 220 230 240 250
ARTAECVVAG LRWHKDTEPG TAAGSLLLGL HDDAGVLHHV GVVGSFKAAE
260 270 280 290 300
RRSLAEELTP LITDGEHPWV GHSDERRTPG GTNRWRKESD WTPLTPERVL
310 320 330 340 350
EVSYSQTEGA APARLRHNGQ FRRWRPDRDA ASCRYDQLDQ PARYDLAAVL

RGEVRKAR
Length:358
Mass (Da):39,092
Last modified:September 22, 2009 - v1
Checksum:i8C22B1334B20BCDE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001630 Genomic DNA. Translation: ACU35528.1.
RefSeqiWP_015800417.1. NC_013093.1.

Genome annotation databases

EnsemblBacteriaiACU35528; ACU35528; Amir_1579.
KEGGiami:Amir_1579.
PATRICi20765999. VBIActMir80567_1610.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001630 Genomic DNA. Translation: ACU35528.1.
RefSeqiWP_015800417.1. NC_013093.1.

3D structure databases

ProteinModelPortaliC6WBG0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi446462.Amir_1579.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU35528; ACU35528; Amir_1579.
KEGGiami:Amir_1579.
PATRICi20765999. VBIActMir80567_1610.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
OMAiWHANTEP.
OrthoDBiEOG63NMFT.

Enzyme and pathway databases

BioCyciAMIR446462:GH7R-1619-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971Imported.

Entry informationi

Entry nameiC6WBG0_ACTMD
AccessioniPrimary (citable) accession number: C6WBG0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: July 22, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.