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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Amir_1571

Organism
Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA primase activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciAMIR446462:GH7R-1611-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Amir_1571Imported
OrganismiActinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971)Imported
Taxonomic identifieri446462 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeActinosynnema
ProteomesiUP000002213 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi446462.Amir_1571.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
OMAiFHPWPVR.
OrthoDBiEOG6FV833.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

C6WBF2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAQALELTVG ERVVRVSNPD KVYFPERGIT KRQVVEYYLA VAEPLLAVLR
60 70 80 90 100
DRPTTLKRFV DGVAGEAFYQ KRVPKGAPEW VRTVGVRFPS GRPAEQVRPT
110 120 130 140 150
EAAVLAWAAN LGTLDFHPWP VRAGDTDHPD ELRVDLDPQP GTGFREAVEV
160 170 180 190 200
AGVLREVLGE LGMTGYPKTS GGRGVHVAVR IRPEWDFVDV RHAVIALGRE
210 220 230 240 250
VERRAPDLAT TSWWKEERGR KVFLDFNQAA RDRTIASAWS VRGTPGATVS
260 270 280 290 300
TPVTWESLGE ADPVAFDVRT VPDYLRDVGD PHAGLDGEAF GIEELLGWYA
310 320 330
NDPRGELPYP PDYPKMPGEP PRVQPSRKRG
Length:330
Mass (Da):36,601
Last modified:September 21, 2009 - v1
Checksum:i277FE16760457C61
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001630 Genomic DNA. Translation: ACU35520.1.
RefSeqiYP_003099366.1. NC_013093.1.

Genome annotation databases

EnsemblBacteriaiACU35520; ACU35520; Amir_1571.
KEGGiami:Amir_1571.
PATRICi20765985. VBIActMir80567_1603.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001630 Genomic DNA. Translation: ACU35520.1.
RefSeqiYP_003099366.1. NC_013093.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi446462.Amir_1571.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU35520; ACU35520; Amir_1571.
KEGGiami:Amir_1571.
PATRICi20765985. VBIActMir80567_1603.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
OMAiFHPWPVR.
OrthoDBiEOG6FV833.

Enzyme and pathway databases

BioCyciAMIR446462:GH7R-1611-MONOMER.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971Imported.

Entry informationi

Entry nameiC6WBF2_ACTMD
AccessioniPrimary (citable) accession number: C6WBF2
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2009
Last sequence update: September 21, 2009
Last modified: March 31, 2015
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.