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C6W4V0

- C6W4V0_DYAFD

UniProt

C6W4V0 - C6W4V0_DYAFD

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Protein

Xylose isomerase

Gene
xylA, Dfer_4723
Organism
Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotations

Cofactori

Binds 2 magnesium ions per subunit By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei107 – 1071 By similarityUniRule annotation
Active sitei110 – 1101 By similarityUniRule annotation
Metal bindingi238 – 2381Magnesium 1 By similarityUniRule annotation
Metal bindingi274 – 2741Magnesium 1 By similarityUniRule annotation
Metal bindingi274 – 2741Magnesium 2 By similarityUniRule annotation
Metal bindingi277 – 2771Magnesium 2 By similarityUniRule annotation
Metal bindingi302 – 3021Magnesium 1 By similarityUniRule annotation
Metal bindingi313 – 3131Magnesium 2 By similarityUniRule annotation
Metal bindingi315 – 3151Magnesium 2 By similarityUniRule annotation
Metal bindingi345 – 3451Magnesium 1 By similarityUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. xylose isomerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-HAMAP
  2. pentose-phosphate shunt Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotationsImported

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotations, Xylose metabolismUniRule annotationSAAS annotations

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotations, Metal-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciDFER471854:GI24-4765-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
Name:xylAUniRule annotation
Ordered Locus Names:Dfer_4723Imported
OrganismiDyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114)Imported
Taxonomic identifieri471854 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesCytophagiaCytophagalesCytophagaceaeDyadobacter
ProteomesiUP000002011: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotations

Interactioni

Subunit structurei

Homotetramer By similarity.UniRule annotationSAAS annotations

Protein-protein interaction databases

STRINGi471854.Dfer_4723.

Structurei

3D structure databases

ProteinModelPortaliC6W4V0.

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG2115.
HOGENOMiHOG000252293.
KOiK01805.
OMAiLFHAHIG.
OrthoDBiEOG62NX4R.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6W4V0-1 [UniParc]FASTAAdd to Basket

« Hide

MSILLGEQEY FKGIGKISFE GPETDNPLAY RWYDENRVIA GKTMKDHLRF    50
AVAYWHTFCG AGLDPFGGPT LFYPWDKKAD AVDRAKDKAD AAFEFITKLG 100
LPYYCFHDVD VVDYDDDVRT NEKRLQALTA YLGEKQKASG VKLLWGTANL 150
FGHHRYMNGA STNPDFDVVA HAGAQIKMAL DATIALGGEN YVFWGGREGY 200
MSLLNTDMKR EQEHFAQMLK ISVAYARANG FKGKFFIEPK PCEPTKHQYD 250
YDAATVIGFL RQHDLLADFS LNLEVNHATL AGHTFEHELQ VAADAGILGS 300
IDANRGDYQN GWDTDQFPND IAEWTRALLV ILNAGGLQGG GINFDAKRRR 350
NSTDVDDVFH AHIGGIDTVA RALVIADKII QNGAYDEIRK NRYASFDGGK 400
GADFEKGALK LEDLFELAAT KGEPATTSGK QEYLENLINR FL 442
Length:442
Mass (Da):49,255
Last modified:September 22, 2009 - v1
Checksum:iC52FBDAE999C4DEA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001619 Genomic DNA. Translation: ACT95924.1.
RefSeqiWP_015814165.1. NC_013037.1.
YP_003089089.1. NC_013037.1.

Genome annotation databases

EnsemblBacteriaiACT95924; ACT95924; Dfer_4723.
GeneIDi8228329.
KEGGidfe:Dfer_4723.
PATRICi21831065. VBIDyaFer416_4851.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001619 Genomic DNA. Translation: ACT95924.1 .
RefSeqi WP_015814165.1. NC_013037.1.
YP_003089089.1. NC_013037.1.

3D structure databases

ProteinModelPortali C6W4V0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 471854.Dfer_4723.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACT95924 ; ACT95924 ; Dfer_4723 .
GeneIDi 8228329.
KEGGi dfe:Dfer_4723.
PATRICi 21831065. VBIDyaFer416_4851.

Phylogenomic databases

eggNOGi COG2115.
HOGENOMi HOG000252293.
KOi K01805.
OMAi LFHAHIG.
OrthoDBi EOG62NX4R.

Enzyme and pathway databases

BioCyci DFER471854:GI24-4765-MONOMER.

Family and domain databases

Gene3Di 3.20.20.150. 1 hit.
HAMAPi MF_00455. Xylose_isom_A.
InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view ]
Pfami PF01261. AP_endonuc_2. 1 hit.
[Graphical view ]
PRINTSi PR00688. XYLOSISMRASE.
SUPFAMi SSF51658. SSF51658. 1 hit.
TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700827 / DSM 18053 / NS114.

Entry informationi

Entry nameiC6W4V0_DYAFD
AccessioniPrimary (citable) accession number: C6W4V0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: September 3, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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