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Protein

Xylose isomerase

Gene

xylA

Organism
Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

Cofactori

Mg2+UniRule annotationNote: Binds 2 magnesium ions per subunit.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei107UniRule annotation1
Active sitei110UniRule annotation1
Metal bindingi238Magnesium 1UniRule annotation1
Metal bindingi274Magnesium 1UniRule annotation1
Metal bindingi274Magnesium 2UniRule annotation1
Metal bindingi277Magnesium 2UniRule annotation1
Metal bindingi302Magnesium 1UniRule annotation1
Metal bindingi313Magnesium 2UniRule annotation1
Metal bindingi315Magnesium 2UniRule annotation1
Metal bindingi345Magnesium 1UniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomeraseUniRule annotationSAAS annotationImported
Biological processCarbohydrate metabolism, Xylose metabolismUniRule annotationSAAS annotation
LigandMagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciDFER471854:G1GEU-4733-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotationSAAS annotation (EC:5.3.1.5UniRule annotationSAAS annotation)
Gene namesi
Name:xylAUniRule annotation
Ordered Locus Names:Dfer_4723Imported
OrganismiDyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114)Imported
Taxonomic identifieri471854 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesCytophagiaCytophagalesCytophagaceaeDyadobacter
Proteomesi
  • UP000002011 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Homotetramer.UniRule annotationSAAS annotation

Protein-protein interaction databases

STRINGi471854.Dfer_4723

Structurei

3D structure databases

ProteinModelPortaliC6W4V0
SMRiC6W4V0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105C93 Bacteria
COG2115 LUCA
HOGENOMiHOG000252293
KOiK01805
OMAiHTFQHEL
OrthoDBiPOG091H07LC

Family and domain databases

HAMAPiMF_00455 Xylose_isom_A, 1 hit
InterProiView protein in InterPro
IPR036237 Xyl_isomerase-like_sf
IPR013452 Xylose_isom_bac
IPR001998 Xylose_isomerase
PANTHERiPTHR32176:SF0 PTHR32176:SF0, 1 hit
PRINTSiPR00688 XYLOSISMRASE
SUPFAMiSSF51658 SSF51658, 1 hit
TIGRFAMsiTIGR02630 xylose_isom_A, 1 hit
PROSITEiView protein in PROSITE
PS51415 XYLOSE_ISOMERASE, 1 hit

Sequencei

Sequence statusi: Complete.

C6W4V0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSILLGEQEY FKGIGKISFE GPETDNPLAY RWYDENRVIA GKTMKDHLRF
60 70 80 90 100
AVAYWHTFCG AGLDPFGGPT LFYPWDKKAD AVDRAKDKAD AAFEFITKLG
110 120 130 140 150
LPYYCFHDVD VVDYDDDVRT NEKRLQALTA YLGEKQKASG VKLLWGTANL
160 170 180 190 200
FGHHRYMNGA STNPDFDVVA HAGAQIKMAL DATIALGGEN YVFWGGREGY
210 220 230 240 250
MSLLNTDMKR EQEHFAQMLK ISVAYARANG FKGKFFIEPK PCEPTKHQYD
260 270 280 290 300
YDAATVIGFL RQHDLLADFS LNLEVNHATL AGHTFEHELQ VAADAGILGS
310 320 330 340 350
IDANRGDYQN GWDTDQFPND IAEWTRALLV ILNAGGLQGG GINFDAKRRR
360 370 380 390 400
NSTDVDDVFH AHIGGIDTVA RALVIADKII QNGAYDEIRK NRYASFDGGK
410 420 430 440
GADFEKGALK LEDLFELAAT KGEPATTSGK QEYLENLINR FL
Length:442
Mass (Da):49,255
Last modified:September 22, 2009 - v1
Checksum:iC52FBDAE999C4DEA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001619 Genomic DNA Translation: ACT95924.1
RefSeqiWP_015814165.1, NC_013037.1

Genome annotation databases

EnsemblBacteriaiACT95924; ACT95924; Dfer_4723
KEGGidfe:Dfer_4723

Similar proteinsi

Entry informationi

Entry nameiC6W4V0_DYAFD
AccessioniPrimary (citable) accession number: C6W4V0
Entry historyiIntegrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: April 25, 2018
This is version 64 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health