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C6W4V0

- C6W4V0_DYAFD

UniProt

C6W4V0 - C6W4V0_DYAFD

Protein

Xylose isomerase

Gene

xylA

Organism
Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (22 Sep 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

    Cofactori

    Binds 2 magnesium ions per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei107 – 1071UniRule annotation
    Active sitei110 – 1101UniRule annotation
    Metal bindingi238 – 2381Magnesium 1UniRule annotation
    Metal bindingi274 – 2741Magnesium 1UniRule annotation
    Metal bindingi274 – 2741Magnesium 2UniRule annotation
    Metal bindingi277 – 2771Magnesium 2UniRule annotation
    Metal bindingi302 – 3021Magnesium 1UniRule annotation
    Metal bindingi313 – 3131Magnesium 2UniRule annotation
    Metal bindingi315 – 3151Magnesium 2UniRule annotation
    Metal bindingi345 – 3451Magnesium 1UniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: UniProtKB-HAMAP
    2. xylose isomerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-xylose metabolic process Source: UniProtKB-HAMAP
    2. pentose-phosphate shunt Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Biological processi

    Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotation, Xylose metabolismUniRule annotationSAAS annotation

    Keywords - Ligandi

    MagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciDFER471854:GI24-4765-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
    Gene namesi
    Name:xylAUniRule annotation
    Ordered Locus Names:Dfer_4723Imported
    OrganismiDyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114)Imported
    Taxonomic identifieri471854 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesCytophagiaCytophagalesCytophagaceaeDyadobacter
    ProteomesiUP000002011: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Interactioni

    Subunit structurei

    Homotetramer.UniRule annotationSAAS annotation

    Protein-protein interaction databases

    STRINGi471854.Dfer_4723.

    Structurei

    3D structure databases

    ProteinModelPortaliC6W4V0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the xylose isomerase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2115.
    HOGENOMiHOG000252293.
    KOiK01805.
    OMAiLFHAHIG.
    OrthoDBiEOG62NX4R.

    Family and domain databases

    Gene3Di3.20.20.150. 1 hit.
    HAMAPiMF_00455. Xylose_isom_A.
    InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view]
    PfamiPF01261. AP_endonuc_2. 1 hit.
    [Graphical view]
    PRINTSiPR00688. XYLOSISMRASE.
    SUPFAMiSSF51658. SSF51658. 1 hit.
    TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
    PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C6W4V0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSILLGEQEY FKGIGKISFE GPETDNPLAY RWYDENRVIA GKTMKDHLRF    50
    AVAYWHTFCG AGLDPFGGPT LFYPWDKKAD AVDRAKDKAD AAFEFITKLG 100
    LPYYCFHDVD VVDYDDDVRT NEKRLQALTA YLGEKQKASG VKLLWGTANL 150
    FGHHRYMNGA STNPDFDVVA HAGAQIKMAL DATIALGGEN YVFWGGREGY 200
    MSLLNTDMKR EQEHFAQMLK ISVAYARANG FKGKFFIEPK PCEPTKHQYD 250
    YDAATVIGFL RQHDLLADFS LNLEVNHATL AGHTFEHELQ VAADAGILGS 300
    IDANRGDYQN GWDTDQFPND IAEWTRALLV ILNAGGLQGG GINFDAKRRR 350
    NSTDVDDVFH AHIGGIDTVA RALVIADKII QNGAYDEIRK NRYASFDGGK 400
    GADFEKGALK LEDLFELAAT KGEPATTSGK QEYLENLINR FL 442
    Length:442
    Mass (Da):49,255
    Last modified:September 22, 2009 - v1
    Checksum:iC52FBDAE999C4DEA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001619 Genomic DNA. Translation: ACT95924.1.
    RefSeqiWP_015814165.1. NC_013037.1.
    YP_003089089.1. NC_013037.1.

    Genome annotation databases

    EnsemblBacteriaiACT95924; ACT95924; Dfer_4723.
    GeneIDi8228329.
    KEGGidfe:Dfer_4723.
    PATRICi21831065. VBIDyaFer416_4851.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001619 Genomic DNA. Translation: ACT95924.1 .
    RefSeqi WP_015814165.1. NC_013037.1.
    YP_003089089.1. NC_013037.1.

    3D structure databases

    ProteinModelPortali C6W4V0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 471854.Dfer_4723.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACT95924 ; ACT95924 ; Dfer_4723 .
    GeneIDi 8228329.
    KEGGi dfe:Dfer_4723.
    PATRICi 21831065. VBIDyaFer416_4851.

    Phylogenomic databases

    eggNOGi COG2115.
    HOGENOMi HOG000252293.
    KOi K01805.
    OMAi LFHAHIG.
    OrthoDBi EOG62NX4R.

    Enzyme and pathway databases

    BioCyci DFER471854:GI24-4765-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.150. 1 hit.
    HAMAPi MF_00455. Xylose_isom_A.
    InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view ]
    Pfami PF01261. AP_endonuc_2. 1 hit.
    [Graphical view ]
    PRINTSi PR00688. XYLOSISMRASE.
    SUPFAMi SSF51658. SSF51658. 1 hit.
    TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
    PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 700827 / DSM 18053 / NS114Imported.

    Entry informationi

    Entry nameiC6W4V0_DYAFD
    AccessioniPrimary (citable) accession number: C6W4V0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 22, 2009
    Last sequence update: September 22, 2009
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3