C6W0L0 (C6W0L0_DYAFD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribulokinase HAMAP MF_00520 RuleBase RU003455
EC=2.7.1.16 HAMAP MF_00520 RuleBase RU003455

Gene names

Name:	araB HAMAP MF_00520
Ordered Locus Names:	Dfer_2398

Organism

Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) [Complete proteome] [HAMAP]

Taxonomic identifier

471854 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Cytophagia › Cytophagales › Cytophagaceae › Dyadobacter

Protein attributes

Sequence length	554 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929
Sequence similarities	Belongs to the ribulokinase family. HAMAP MF_00520 RuleBase RU003455

Ontologies

Keywords
Biological process	Arabinose catabolism HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929 Carbohydrate metabolism
Ligand	ATP-binding HAMAP MF_00520 SAAS SAAS005929 Nucleotide-binding
Molecular function	Kinase HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929 EMBL ACT93616.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	L-arabinose catabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ribulokinase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6W0L0 [UniParc]. Last modified September 22, 2009. Version 1. Checksum: A0D3A1AB99D0E0CE	FASTA	554	60,420
	10 20 30 40 50 60 MEENYVIGID FGTDSVRALV VNANTGEQAG TAVQEYPRWK QGKYCDAGSS QFRQHPLDYL 70 80 90 100 110 120 ESMESAVRGA LDQAPAAVRQ QVRGISVDTT GSTPVAVDRQ GTPLALLPEF AENPNGMFIL 130 140 150 160 170 180 WKDHTANAEA EEINRLAHRY DIDFTKYVGG IYSSEWFWAK ILRTLRVDTA VREQAFSWVE 190 200 210 220 230 240 HCDWISAELT GMTDPLQLKR SRCAAGHKAL WHQDFDGLPS NAFFTELDPL LDGLRDRLFS 250 260 270 280 290 300 TTETSDQPMG TISKEWAAKL GIPENVVIGV GAFDAHMGAV GALIEPYSLC KVIGTSTCDM 310 320 330 340 350 360 LVAPNEEVGH LLIKGICGQV DGSIVPGMLG MEAGQSAFGD IYAWFSKLII EPVRTLLGEE 370 380 390 400 410 420 EAAELSKKLI PHLAEQAAKL PVTEKDIIAI DWLNGRRTPD AKHTLKGGLL GLNLASDSPR 430 440 450 460 470 480 IFKALVEATA YGSKAIVERF RSEGVPIHQV IAIGGVAKKS AFVMQTLADV LNMPIKVATS 490 500 510 520 530 540 EQACALGAAM FASVAAGVHA NLQEAQEAMS SGFDAVYEPR EAQSAIYQQL YQKYLEAGAY 550 IENEFLQKAY LELT

References

[1]

"Complete genome sequence of Dyadobacter fermentans type strain (NS114)." Lang E., Lapidus A., Chertkov O., Brettin T., Detter J.C., Han C., Copeland A., Glavina del Rio T., Nolan M., Chen F., Lucas S., Tice H., Cheng J.-F., Land M., Hauser L., Chang Y.-J., Jeffries C.C., Kopitz M. , Bruce D., Goodwin L., Pitluck S., Ovchinnikova G., Pati A., Ivanova N., Mavromatis K., Chen A., Palaniappan K., Chain P., Bristow J., Dalin E., Eisen J.A., Markowitz V., Hugenholtz P., Goeker M., Rohde M., Kyrpides N.C., Klenk H.-P. Stand. Genomic Sci. 1:133-140(2009) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700827 / DSM 18053 / NS114.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001619 Genomic DNA. Translation: ACT93616.1.
RefSeq	YP_003086781.1. NC_013037.1.
3D structure databases
ProteinModelPortal	C6W0L0.
ModBase	Search...
Protein-protein interaction databases
STRING	C6W0L0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	8225970.
GenomeReviews	Gene locus Dfer_2398 in contig CP001619_GR.
KEGG	dfe:Dfer_2398.
PATRIC	21826230. VBIDyaFer416_2464.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	NGRRTPD.
ProtClustDB	PRK04123.
Family and domain databases
HAMAP	MF_00520. Ribulokinase. [Tree]
InterPro	IPR000577. Carb_kinase_FGGY. IPR018485. Carb_kinase_FGGY_C. IPR018484. Carb_kinase_FGGY_N. IPR005929. L_ribulokin. [Graphical view]
KO	K00853.
PANTHER	PTHR10196. FGGY_kin. 1 hit.
Pfam	PF02782. FGGY_C. 1 hit. PF00370. FGGY_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR01234. L-ribulokinase. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C6W0L0_DYAFD

Accession

Primary (citable) accession number: C6W0L0

Entry history

Integrated into UniProtKB/TrEMBL:	September 22, 2009
Last sequence update:	September 22, 2009
Last modified:	December 14, 2011
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)