C6VYK6 (C6VYK6_DYAFD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ribulose-bisphosphate carboxylase EMBL ACT93361.1
EC=4.1.1.39 EMBL ACT93361.1

Gene names

Ordered Locus Names:

Dfer_2138

Organism

Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) [Complete proteome] [HAMAP] EMBL ACT93361.1

Taxonomic identifier

471854 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Cytophagia › Cytophagales › Cytophagaceae › Dyadobacter › Dyadobacter fermentans

Protein attributes

Sequence length	420 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
Molecular function	Lyase EMBL ACT93361.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carbon fixation Inferred from electronic annotation. Source: InterPro
Molecular_function	magnesium ion binding Inferred from electronic annotation. Source: InterPro ribulose-bisphosphate carboxylase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6VYK6 [UniParc]. Last modified September 22, 2009. Version 1. Checksum: 6B9E7D968535C566	FASTA	420	45,811
	10 20 30 40 50 60 MERITARYYI ETPYAVEKAA AVLAGEQSSG TFVAVPGETE ELKNRFAARV ELIELLETVS 70 80 90 100 110 120 EPAIPGASSP DGQYRRAHVE VSWSVENFGH NLPMLVSTLQ GNLYEITQFT GLKLLDIHFP 130 140 150 160 170 180 ETYASHYRGP RFGIGGCRSL TGVDSGRPLI GTIIKPSVGL TPAQTAETVG ILAQAGIDFV 190 200 210 220 230 240 KDDELMASTA NSLFEERVDA VMQVINRHAD RTGKKVMYAF NISDEMDEML RKYEHIVRSG 250 260 270 280 290 300 GTCAMISINS TGLAAAKRIC DIGELAIHGH RNGWGMLNRH PLLGIEFPAY QKLWRLAGVD 310 320 330 340 350 360 QLHVNGIRNK FWESDDSVVR SIASCLHHAP LDKPVLPVVS SGQWGGQAFE TYRRTQTTNL 370 380 390 400 410 420 LYMAGGGIMA HPGGPAAGVT ALQQAWEAAV GGLTLAEAAR DYPEFGKSVE KFGQLHFDRA

References

[1]

"Complete genome sequence of Dyadobacter fermentans type strain (NS114)." Lang E., Lapidus A., Chertkov O., Brettin T., Detter J.C., Han C., Copeland A., Glavina del Rio T., Nolan M., Chen F., Lucas S., Tice H., Cheng J.-F., Land M., Hauser L., Chang Y.-J., Jeffries C.C., Kopitz M. , Bruce D., Goodwin L., Pitluck S., Ovchinnikova G., Pati A., Ivanova N., Mavromatis K., Chen A., Palaniappan K., Chain P., Bristow J., Dalin E., Eisen J.A., Markowitz V., Hugenholtz P., Goeker M., Rohde M., Kyrpides N.C., Klenk H.-P. Stand. Genomic Sci. 1:133-140(2009) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700827 / DSM 18053 / NS114.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001619 Genomic DNA. Translation: ACT93361.1.
RefSeq	YP_003086526.1. NC_013037.1.
3D structure databases
ProteinModelPortal	C6VYK6.
ModBase	Search...
Protein-protein interaction databases
STRING	471854.Dfer_2138.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACT93361; ACT93361; Dfer_2138.
GeneID	8225710.
KEGG	dfe:Dfer_2138.
PATRIC	21825704. VBIDyaFer416_2201.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1850.
HOGENOM	HOG000230831.
KO	K01601.
OMA	NITDEVD.
ProtClustDB	CLSK2546562.
Enzyme and pathway databases
BioCyc	DFER471854:GI24-2145-MONOMER.
Family and domain databases
Gene3D	3.20.20.110. 1 hit. 3.30.70.150. 1 hit.
InterPro	IPR020878. RuBisCo_large_chain_AS. IPR000685. RuBisCO_lsu_C. IPR017443. RuBisCO_lsu_fd_N. [Graphical view]
Pfam	PF00016. RuBisCO_large. 1 hit. [Graphical view]
SUPFAM	SSF51649. RuBisCO_large. 1 hit. SSF54966. RuBisCO_large. 1 hit.
PROSITE	PS00157. RUBISCO_LARGE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6VYK6_DYAFD

Accession

Primary (citable) accession number: C6VYK6

Entry history

Integrated into UniProtKB/TrEMBL:	September 22, 2009
Last sequence update:	September 22, 2009
Last modified:	May 1, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)