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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Dfer_2083

Organism
Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciDFER471854:GI24-2090-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Dfer_2083Imported
OrganismiDyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114)Imported
Taxonomic identifieri471854 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesCytophagiaCytophagalesCytophagaceaeDyadobacter
ProteomesiUP000002011 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi471854.Dfer_2083.

Structurei

3D structure databases

ProteinModelPortaliC6VXG3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000220639.
KOiK05343.
OMAiAVIYQID.
OrthoDBiEOG6RVFV2.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

C6VXG3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLEELWYKNA VIYSLDLETF MDGNNDGTGD FEGLCNRLDY LHALGLDTIW
60 70 80 90 100
LAPFQPTPNR DNGYDISDFY GVDPRHGSSG DFVDFIHKAR KLGIKVIIDL
110 120 130 140 150
VVNHTSDEHR WFKESRSSKD NPKRHWYVWS DKRPKGWNKG MVFPGVQKAT
160 170 180 190 200
WTRDKKTGDY YFHRFYEFQP DLNTDNPEVR AEINRIMGYW LELGIAGFRV
210 220 230 240 250
DAVPFILESP AAEGKSPLHF EYLKEMRRFL QWRRGDAVLL GEANVLPQES
260 270 280 290 300
KKYFGENGEG IHLMFNFYVN QYTFYALATA DTRPLIKALE ATREKAPGSQ
310 320 330 340 350
WAFFLRNHDE LDLDRLAPEE RQIVFDRFGP EKNMQIYERG IRRRLSPMLG
360 370 380 390 400
NRQQTELAYS LMFSFPGTPV IRYGDEIGMG DNLALQERDA VRTPMQWSGE
410 420 430 440 450
VNGGFSRANK LIHPVIDEGY YAYEHVNVEH QRRDAGSLLN WMTTLIRLRK
460 470 480 490 500
ECPEIGYGEW EIIDTGYREI LGMRYTWRNR SLLIWHNFSE KSLELVVPEN
510 520 530 540
QAGTGRLIDL MNNIESVLDH KGRHTITLEA YGYRWFKAQL G
Length:541
Mass (Da):63,147
Last modified:September 22, 2009 - v1
Checksum:i02235ACF46F40D11
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001619 Genomic DNA. Translation: ACT93306.1.
RefSeqiWP_015811558.1. NC_013037.1.

Genome annotation databases

EnsemblBacteriaiACT93306; ACT93306; Dfer_2083.
KEGGidfe:Dfer_2083.
PATRICi21825594. VBIDyaFer416_2146.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001619 Genomic DNA. Translation: ACT93306.1.
RefSeqiWP_015811558.1. NC_013037.1.

3D structure databases

ProteinModelPortaliC6VXG3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi471854.Dfer_2083.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACT93306; ACT93306; Dfer_2083.
KEGGidfe:Dfer_2083.
PATRICi21825594. VBIDyaFer416_2146.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000220639.
KOiK05343.
OMAiAVIYQID.
OrthoDBiEOG6RVFV2.

Enzyme and pathway databases

BioCyciDFER471854:GI24-2090-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700827 / DSM 18053 / NS114Imported.

Entry informationi

Entry nameiC6VXG3_DYAFD
AccessioniPrimary (citable) accession number: C6VXG3
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: July 22, 2015
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.