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C6VMK1 (C6VMK1_LACPJ) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:gadB EMBL ACT63609.1
Ordered Locus Names:JDM1_2723 EMBL ACT63609.1
OrganismLactobacillus plantarum (strain JDM1) [Complete proteome] [HAMAP] EMBL ACT63609.1
Taxonomic identifier644042 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaeLactobacillus

Protein attributes

Sequence length469 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
C6VMK1 [UniParc].

Last modified September 22, 2009. Version 1.
Checksum: 4F50FCA1B897CE4B

FASTA46953,536
        10         20         30         40         50         60 
MAMLYGKHNH EAEEYLEPVF GAPSEQHDLP KYRLPKHSLS PREADRLVRD ELLDEGNSRL 

        70         80         90        100        110        120 
NLATFCQTYM EPEAVELMKD TLAKNAIDKS EYPRTAEIEN RCVNIIANLW HAPDDEHFTG 

       130        140        150        160        170        180 
TSTIGSSEAC MLGGLAMKFA WRKRAQAAGL DLNAHRPNLV ISAGYQVCWE KFCVYWDVDM 

       190        200        210        220        230        240 
HVVPMDEQHM ALDVNHVLDY VDEYTIGIVG IMGITYTGQD DDLAALDKVV THYNHQHPKL 

       250        260        270        280        290        300 
PVYIHVDAAS GGFYTPFIEP QLIWDFRLAN VVSINASGHK YGLVYPGVGW VVWRDRQFLP 

       310        320        330        340        350        360 
PELVFKVSYL GGELPTMAIN FSHSAAQLIG QYYNFIRFGM DGYREIQTKT HDVARYLAAA 

       370        380        390        400        410        420 
LDKVGEFKMI NNGHQLPLIC YQLAPREDRE WTLYDLSDRL LMNGWQVPTY PLPANLEQQV 

       430        440        450        460 
IQRIVVRADF GMNMAHDFMD DLTKAVHDLN HAHIVYHHDA APKKYGFTH 

« Hide

References

[1]"Complete genome sequence of Lactobacillus plantarum JDM1."
Zhang Z.Y., Liu C., Zhu Y.Z., Zhong Y., Zhu Y.Q., Zheng H.J., Zhao G.P., Wang S.Y., Guo X.K.
J. Bacteriol. 191:5020-5021(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDM1 EMBL ACT63609.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001617 Genomic DNA. Translation: ACT63609.1.
RefSeqYP_003064306.1. NC_012984.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING644042.JDM1_2723.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT63609; ACT63609; JDM1_2723.
GeneID8188538.
KEGGlpj:JDM1_2723.
PATRIC22246174. VBILacPla68346_2752.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000070228.
KOK01580.
OMAPTFQINF.
OrthoDBEOG6TFCPW.

Enzyme and pathway databases

BioCycLPLA644042:GHFY-2800-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC6VMK1_LACPJ
AccessionPrimary (citable) accession number: C6VMK1
Entry history
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: May 14, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)