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C6VM99

- C6VM99_LACPJ

UniProt

C6VM99 - C6VM99_LACPJ

Protein

Ribonuclease R

Gene

rnr

Organism
Lactobacillus plantarum (strain JDM1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (22 Sep 2009)
      Previous versions | rss
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    Functioni

    3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.UniRule annotation

    Catalytic activityi

    Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotationSAAS annotation

    GO - Molecular functioni

    1. exoribonuclease II activity Source: UniProtKB-HAMAP
    2. RNA binding Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    ExonucleaseUniRule annotationSAAS annotation, Hydrolase, Nuclease

    Keywords - Ligandi

    RNA-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciLPLA644042:GHFY-672-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribonuclease RUniRule annotation (EC:3.1.13.1UniRule annotation)
    Short name:
    RNase RUniRule annotation
    Gene namesi
    Name:rnrUniRule annotation
    Ordered Locus Names:JDM1_0661Imported
    OrganismiLactobacillus plantarum (strain JDM1)Imported
    Taxonomic identifieri644042 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaeLactobacillus
    ProteomesiUP000002057: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi644042.JDM1_0661.

    Structurei

    3D structure databases

    ProteinModelPortaliC6VM99.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini635 – 71581S1 motifUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the RNR ribonuclease family. RNase R subfamily.UniRule annotation
    Contains 1 S1 motif domain.UniRule annotation
    Contains S1 motif domain.SAAS annotation
    Contains Smotif domain.SAAS annotation

    Phylogenomic databases

    eggNOGiCOG0557.
    HOGENOMiHOG000071119.
    KOiK12573.
    OMAiGFFVRLN.
    OrthoDBiEOG6Q5NRD.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    HAMAPiMF_01895. RNase_R.
    InterProiIPR012340. NA-bd_OB-fold.
    IPR003029. Rbsml_prot_S1_RNA-bd_dom.
    IPR022967. RNA-binding_domain_S1.
    IPR013223. RNase_B_OB_dom.
    IPR022966. RNase_II/R_CS.
    IPR004476. RNase_II/RNase_R.
    IPR011805. RNase_R.
    [Graphical view]
    PfamiPF08206. OB_RNB. 1 hit.
    PF00575. S1. 1 hit.
    [Graphical view]
    SMARTiSM00316. S1. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 4 hits.
    TIGRFAMsiTIGR00358. 3_prime_RNase. 1 hit.
    TIGR02063. RNase_R. 1 hit.
    PROSITEiPS01175. RIBONUCLEASE_II. 1 hit.
    PS50126. S1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C6VM99-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSEANLQEQI LTFLQAHPDR TYSVEQLTDE LHFTGATAFT FLVKELANME    50
    RKKLVSTDDH DHFKLVQETK TVEGSFHGND KGFGFVRYDP DLPDIYINPD 100
    NTQFAITGDD VAVEIIRPAR PGSDRGPEGK IVSIVKRNYT QIVGAYTPST 150
    DEDGIIGSVE IKDKKLSKYQ LLITDQGLHP TEGEVIIAEV AAYPDAQHPT 200
    RMIGIAKQVI GSVDDPGMDV LQVVYQHDVP SVFPEEVTDE ANRIPDYVTD 250
    EEKVGRVDIT DQPLVTIDGA ESKDLDDAVV AWRLPNGNFH LGVHIADVSH 300
    YVTENSELDR EAFKRGTSVY LTDRVIPMLP RRLSNGICSL NPDVERLAMS 350
    CEMEIDQTGE IVNHKIFQSV IRSHARMTYD AVNQILEAHD PKTREKYADL 400
    VDMFDTMGDL HRILYKHRRH RGAIDFDDNE AKIIVDEAGH PIDIQLRVRG 450
    LAERMIESFM LAANETVAKN YSQLKVPFIY RVHETPDSDR MLSFFEFVTN 500
    FGVSVKGSSK DVKPKMLQDV LKKVAGKPEE AMVSVMMLRS MKQARYADQS 550
    LGHFGLAAPY YTHFTSPIRR YPDMMVHRLI RHYAENGTGE EARARYRDNL 600
    PNIAETTSDH ERRGIDTERD VDSMKKAEYM ADHVGETFEA VVDSVMKFGL 650
    FVELENTVEG LVHISTMDDD YYEYVEKQLA LVGRKTKRTF RIGQPVKVQL 700
    MRVDKDQREV DFKLLNPEEA PKTDLLPKRE HHDNYRGNNR RGGNNGNYRR 750
    NGNNNNRNND HRGGNNNNHR NGNSNGRRNN NNHNSNNNNH STNNNRRSST 800
    DRRR 804
    Length:804
    Mass (Da):91,566
    Last modified:September 22, 2009 - v1
    Checksum:iE12201756A5F7682
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001617 Genomic DNA. Translation: ACT61549.1.
    RefSeqiYP_003062246.1. NC_012984.1.

    Genome annotation databases

    EnsemblBacteriaiACT61549; ACT61549; JDM1_0661.
    GeneIDi8188662.
    KEGGilpj:JDM1_0661.
    PATRICi22241855. VBILacPla68346_0659.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001617 Genomic DNA. Translation: ACT61549.1 .
    RefSeqi YP_003062246.1. NC_012984.1.

    3D structure databases

    ProteinModelPortali C6VM99.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 644042.JDM1_0661.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACT61549 ; ACT61549 ; JDM1_0661 .
    GeneIDi 8188662.
    KEGGi lpj:JDM1_0661.
    PATRICi 22241855. VBILacPla68346_0659.

    Phylogenomic databases

    eggNOGi COG0557.
    HOGENOMi HOG000071119.
    KOi K12573.
    OMAi GFFVRLN.
    OrthoDBi EOG6Q5NRD.

    Enzyme and pathway databases

    BioCyci LPLA644042:GHFY-672-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    HAMAPi MF_01895. RNase_R.
    InterProi IPR012340. NA-bd_OB-fold.
    IPR003029. Rbsml_prot_S1_RNA-bd_dom.
    IPR022967. RNA-binding_domain_S1.
    IPR013223. RNase_B_OB_dom.
    IPR022966. RNase_II/R_CS.
    IPR004476. RNase_II/RNase_R.
    IPR011805. RNase_R.
    [Graphical view ]
    Pfami PF08206. OB_RNB. 1 hit.
    PF00575. S1. 1 hit.
    [Graphical view ]
    SMARTi SM00316. S1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 4 hits.
    TIGRFAMsi TIGR00358. 3_prime_RNase. 1 hit.
    TIGR02063. RNase_R. 1 hit.
    PROSITEi PS01175. RIBONUCLEASE_II. 1 hit.
    PS50126. S1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: JDM1Imported.

    Entry informationi

    Entry nameiC6VM99_LACPJ
    AccessioniPrimary (citable) accession number: C6VM99
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 22, 2009
    Last sequence update: September 22, 2009
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3