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C6VM99

- C6VM99_LACPJ

UniProt

C6VM99 - C6VM99_LACPJ

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Protein

Ribonuclease R

Gene

rnr

Organism
Lactobacillus plantarum (strain JDM1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.UniRule annotation

Catalytic activityi

Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotationSAAS annotation

GO - Molecular functioni

  1. exoribonuclease II activity Source: UniProtKB-HAMAP
  2. RNA binding Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

ExonucleaseUniRule annotationSAAS annotation, Hydrolase, Nuclease

Keywords - Ligandi

RNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciLPLA644042:GHFY-672-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease RUniRule annotation (EC:3.1.13.1UniRule annotation)
Short name:
RNase RUniRule annotation
Gene namesi
Name:rnrUniRule annotation
Ordered Locus Names:JDM1_0661Imported
OrganismiLactobacillus plantarum (strain JDM1)Imported
Taxonomic identifieri644042 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaeLactobacillus
ProteomesiUP000002057: Chromosome

Subcellular locationi

Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi644042.JDM1_0661.

Structurei

3D structure databases

ProteinModelPortaliC6VM99.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini635 – 71581S1 motifUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RNR ribonuclease family. RNase R subfamily.UniRule annotation
Contains 1 S1 motif domain.UniRule annotation
Contains S1 motif domain.SAAS annotation
Contains Smotif domain.SAAS annotation

Phylogenomic databases

eggNOGiCOG0557.
HOGENOMiHOG000071119.
KOiK12573.
OMAiGFFVRLN.
OrthoDBiEOG6Q5NRD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_01895. RNase_R.
InterProiIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR013223. RNase_B_OB_dom.
IPR022966. RNase_II/R_CS.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
IPR022967. S1_dom.
[Graphical view]
PfamiPF08206. OB_RNB. 1 hit.
PF00575. S1. 1 hit.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 4 hits.
TIGRFAMsiTIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEiPS01175. RIBONUCLEASE_II. 1 hit.
PS50126. S1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6VM99-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSEANLQEQI LTFLQAHPDR TYSVEQLTDE LHFTGATAFT FLVKELANME
60 70 80 90 100
RKKLVSTDDH DHFKLVQETK TVEGSFHGND KGFGFVRYDP DLPDIYINPD
110 120 130 140 150
NTQFAITGDD VAVEIIRPAR PGSDRGPEGK IVSIVKRNYT QIVGAYTPST
160 170 180 190 200
DEDGIIGSVE IKDKKLSKYQ LLITDQGLHP TEGEVIIAEV AAYPDAQHPT
210 220 230 240 250
RMIGIAKQVI GSVDDPGMDV LQVVYQHDVP SVFPEEVTDE ANRIPDYVTD
260 270 280 290 300
EEKVGRVDIT DQPLVTIDGA ESKDLDDAVV AWRLPNGNFH LGVHIADVSH
310 320 330 340 350
YVTENSELDR EAFKRGTSVY LTDRVIPMLP RRLSNGICSL NPDVERLAMS
360 370 380 390 400
CEMEIDQTGE IVNHKIFQSV IRSHARMTYD AVNQILEAHD PKTREKYADL
410 420 430 440 450
VDMFDTMGDL HRILYKHRRH RGAIDFDDNE AKIIVDEAGH PIDIQLRVRG
460 470 480 490 500
LAERMIESFM LAANETVAKN YSQLKVPFIY RVHETPDSDR MLSFFEFVTN
510 520 530 540 550
FGVSVKGSSK DVKPKMLQDV LKKVAGKPEE AMVSVMMLRS MKQARYADQS
560 570 580 590 600
LGHFGLAAPY YTHFTSPIRR YPDMMVHRLI RHYAENGTGE EARARYRDNL
610 620 630 640 650
PNIAETTSDH ERRGIDTERD VDSMKKAEYM ADHVGETFEA VVDSVMKFGL
660 670 680 690 700
FVELENTVEG LVHISTMDDD YYEYVEKQLA LVGRKTKRTF RIGQPVKVQL
710 720 730 740 750
MRVDKDQREV DFKLLNPEEA PKTDLLPKRE HHDNYRGNNR RGGNNGNYRR
760 770 780 790 800
NGNNNNRNND HRGGNNNNHR NGNSNGRRNN NNHNSNNNNH STNNNRRSST

DRRR
Length:804
Mass (Da):91,566
Last modified:September 22, 2009 - v1
Checksum:iE12201756A5F7682
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001617 Genomic DNA. Translation: ACT61549.1.
RefSeqiYP_003062246.1. NC_012984.1.

Genome annotation databases

EnsemblBacteriaiACT61549; ACT61549; JDM1_0661.
GeneIDi8188662.
KEGGilpj:JDM1_0661.
PATRICi22241855. VBILacPla68346_0659.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001617 Genomic DNA. Translation: ACT61549.1 .
RefSeqi YP_003062246.1. NC_012984.1.

3D structure databases

ProteinModelPortali C6VM99.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 644042.JDM1_0661.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACT61549 ; ACT61549 ; JDM1_0661 .
GeneIDi 8188662.
KEGGi lpj:JDM1_0661.
PATRICi 22241855. VBILacPla68346_0659.

Phylogenomic databases

eggNOGi COG0557.
HOGENOMi HOG000071119.
KOi K12573.
OMAi GFFVRLN.
OrthoDBi EOG6Q5NRD.

Enzyme and pathway databases

BioCyci LPLA644042:GHFY-672-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
HAMAPi MF_01895. RNase_R.
InterProi IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR013223. RNase_B_OB_dom.
IPR022966. RNase_II/R_CS.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
IPR022967. S1_dom.
[Graphical view ]
Pfami PF08206. OB_RNB. 1 hit.
PF00575. S1. 1 hit.
[Graphical view ]
SMARTi SM00316. S1. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 4 hits.
TIGRFAMsi TIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEi PS01175. RIBONUCLEASE_II. 1 hit.
PS50126. S1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JDM1Imported.

Entry informationi

Entry nameiC6VM99_LACPJ
AccessioniPrimary (citable) accession number: C6VM99
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: October 29, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3