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C6VM99

- C6VM99_LACPJ

UniProt

C6VM99 - C6VM99_LACPJ

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Protein
Ribonuclease R
Gene
rnr, JDM1_0661
Organism
Lactobacillus plantarum (strain JDM1)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs By similarity.UniRule annotation

Catalytic activityi

Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotationSAAS annotations

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-HAMAP
  2. exoribonuclease II activity Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

ExonucleaseUniRule annotationSAAS annotations, Hydrolase, Nuclease

Keywords - Ligandi

RNA-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciLPLA644042:GHFY-672-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease RUniRule annotation (EC:3.1.13.1UniRule annotation)
Short name:
RNase RUniRule annotation
Gene namesi
Name:rnrUniRule annotation
Ordered Locus Names:JDM1_0661Imported
OrganismiLactobacillus plantarum (strain JDM1)Imported
Taxonomic identifieri644042 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaeLactobacillus
ProteomesiUP000002057: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotations

Interactioni

Protein-protein interaction databases

STRINGi644042.JDM1_0661.

Structurei

3D structure databases

ProteinModelPortaliC6VM99.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini635 – 71581S1 motif By similarityUniRule annotation
Add
BLAST

Sequence similaritiesi

Contains 1 S1 motif domain.UniRule annotation
Contains S1 motif domain.SAAS annotations
Contains Smotif domain.SAAS annotations

Phylogenomic databases

eggNOGiCOG0557.
HOGENOMiHOG000071119.
KOiK12573.
OMAiGFFVRLN.
OrthoDBiEOG6Q5NRD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_01895. RNase_R.
InterProiIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
IPR013223. RNase_B_OB_dom.
IPR022966. RNase_II/R_CS.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
[Graphical view]
PfamiPF08206. OB_RNB. 1 hit.
PF00575. S1. 1 hit.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 4 hits.
TIGRFAMsiTIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEiPS01175. RIBONUCLEASE_II. 1 hit.
PS50126. S1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6VM99-1 [UniParc]FASTAAdd to Basket

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MSEANLQEQI LTFLQAHPDR TYSVEQLTDE LHFTGATAFT FLVKELANME    50
RKKLVSTDDH DHFKLVQETK TVEGSFHGND KGFGFVRYDP DLPDIYINPD 100
NTQFAITGDD VAVEIIRPAR PGSDRGPEGK IVSIVKRNYT QIVGAYTPST 150
DEDGIIGSVE IKDKKLSKYQ LLITDQGLHP TEGEVIIAEV AAYPDAQHPT 200
RMIGIAKQVI GSVDDPGMDV LQVVYQHDVP SVFPEEVTDE ANRIPDYVTD 250
EEKVGRVDIT DQPLVTIDGA ESKDLDDAVV AWRLPNGNFH LGVHIADVSH 300
YVTENSELDR EAFKRGTSVY LTDRVIPMLP RRLSNGICSL NPDVERLAMS 350
CEMEIDQTGE IVNHKIFQSV IRSHARMTYD AVNQILEAHD PKTREKYADL 400
VDMFDTMGDL HRILYKHRRH RGAIDFDDNE AKIIVDEAGH PIDIQLRVRG 450
LAERMIESFM LAANETVAKN YSQLKVPFIY RVHETPDSDR MLSFFEFVTN 500
FGVSVKGSSK DVKPKMLQDV LKKVAGKPEE AMVSVMMLRS MKQARYADQS 550
LGHFGLAAPY YTHFTSPIRR YPDMMVHRLI RHYAENGTGE EARARYRDNL 600
PNIAETTSDH ERRGIDTERD VDSMKKAEYM ADHVGETFEA VVDSVMKFGL 650
FVELENTVEG LVHISTMDDD YYEYVEKQLA LVGRKTKRTF RIGQPVKVQL 700
MRVDKDQREV DFKLLNPEEA PKTDLLPKRE HHDNYRGNNR RGGNNGNYRR 750
NGNNNNRNND HRGGNNNNHR NGNSNGRRNN NNHNSNNNNH STNNNRRSST 800
DRRR 804
Length:804
Mass (Da):91,566
Last modified:September 22, 2009 - v1
Checksum:iE12201756A5F7682
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001617 Genomic DNA. Translation: ACT61549.1.
RefSeqiYP_003062246.1. NC_012984.1.

Genome annotation databases

EnsemblBacteriaiACT61549; ACT61549; JDM1_0661.
GeneIDi8188662.
KEGGilpj:JDM1_0661.
PATRICi22241855. VBILacPla68346_0659.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001617 Genomic DNA. Translation: ACT61549.1 .
RefSeqi YP_003062246.1. NC_012984.1.

3D structure databases

ProteinModelPortali C6VM99.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 644042.JDM1_0661.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACT61549 ; ACT61549 ; JDM1_0661 .
GeneIDi 8188662.
KEGGi lpj:JDM1_0661.
PATRICi 22241855. VBILacPla68346_0659.

Phylogenomic databases

eggNOGi COG0557.
HOGENOMi HOG000071119.
KOi K12573.
OMAi GFFVRLN.
OrthoDBi EOG6Q5NRD.

Enzyme and pathway databases

BioCyci LPLA644042:GHFY-672-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
HAMAPi MF_01895. RNase_R.
InterProi IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
IPR013223. RNase_B_OB_dom.
IPR022966. RNase_II/R_CS.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
[Graphical view ]
Pfami PF08206. OB_RNB. 1 hit.
PF00575. S1. 1 hit.
[Graphical view ]
SMARTi SM00316. S1. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 4 hits.
TIGRFAMsi TIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEi PS01175. RIBONUCLEASE_II. 1 hit.
PS50126. S1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JDM1Imported.

Entry informationi

Entry nameiC6VM99_LACPJ
AccessioniPrimary (citable) accession number: C6VM99
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: May 14, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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