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C6VM99 (C6VM99_LACPJ) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Ribonuclease R HAMAP-Rule MF_01895

Short name=RNase R HAMAP-Rule MF_01895
EC=3.1.13.1 HAMAP-Rule MF_01895
Gene names
Name:rnr HAMAP-Rule MF_01895
Ordered Locus Names:JDM1_0661 EMBL ACT61549.1
OrganismLactobacillus plantarum (strain JDM1) [Complete proteome] [HAMAP] EMBL ACT61549.1
Taxonomic identifier644042 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaeLactobacillus

Protein attributes

Sequence length804 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs By similarity. HAMAP-Rule MF_01895

Catalytic activity

Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates. HAMAP-Rule MF_01895 SAAS SAAS004476

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_01895 SAAS SAAS004476.

Sequence similarities

Belongs to the RNR ribonuclease family. RNase R subfamily. HAMAP-Rule MF_01895

Contains 1 S1 motif domain. HAMAP-Rule MF_01895

Contains S1 motif domain. SAAS SAAS004476

Ontologies

Keywords
   Cellular componentCytoplasm HAMAP-Rule MF_01895 SAAS SAAS004476
   LigandRNA-binding HAMAP-Rule MF_01895 SAAS SAAS004476
   Molecular functionExonuclease HAMAP-Rule MF_01895 SAAS SAAS004476
Hydrolase
Nuclease
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

exoribonuclease II activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain635 – 71581S1 motif By similarity HAMAP-Rule MF_01895

Sequences

Sequence LengthMass (Da)Tools
C6VM99 [UniParc].

Last modified September 22, 2009. Version 1.
Checksum: E12201756A5F7682

FASTA80491,566
        10         20         30         40         50         60 
MSEANLQEQI LTFLQAHPDR TYSVEQLTDE LHFTGATAFT FLVKELANME RKKLVSTDDH 

        70         80         90        100        110        120 
DHFKLVQETK TVEGSFHGND KGFGFVRYDP DLPDIYINPD NTQFAITGDD VAVEIIRPAR 

       130        140        150        160        170        180 
PGSDRGPEGK IVSIVKRNYT QIVGAYTPST DEDGIIGSVE IKDKKLSKYQ LLITDQGLHP 

       190        200        210        220        230        240 
TEGEVIIAEV AAYPDAQHPT RMIGIAKQVI GSVDDPGMDV LQVVYQHDVP SVFPEEVTDE 

       250        260        270        280        290        300 
ANRIPDYVTD EEKVGRVDIT DQPLVTIDGA ESKDLDDAVV AWRLPNGNFH LGVHIADVSH 

       310        320        330        340        350        360 
YVTENSELDR EAFKRGTSVY LTDRVIPMLP RRLSNGICSL NPDVERLAMS CEMEIDQTGE 

       370        380        390        400        410        420 
IVNHKIFQSV IRSHARMTYD AVNQILEAHD PKTREKYADL VDMFDTMGDL HRILYKHRRH 

       430        440        450        460        470        480 
RGAIDFDDNE AKIIVDEAGH PIDIQLRVRG LAERMIESFM LAANETVAKN YSQLKVPFIY 

       490        500        510        520        530        540 
RVHETPDSDR MLSFFEFVTN FGVSVKGSSK DVKPKMLQDV LKKVAGKPEE AMVSVMMLRS 

       550        560        570        580        590        600 
MKQARYADQS LGHFGLAAPY YTHFTSPIRR YPDMMVHRLI RHYAENGTGE EARARYRDNL 

       610        620        630        640        650        660 
PNIAETTSDH ERRGIDTERD VDSMKKAEYM ADHVGETFEA VVDSVMKFGL FVELENTVEG 

       670        680        690        700        710        720 
LVHISTMDDD YYEYVEKQLA LVGRKTKRTF RIGQPVKVQL MRVDKDQREV DFKLLNPEEA 

       730        740        750        760        770        780 
PKTDLLPKRE HHDNYRGNNR RGGNNGNYRR NGNNNNRNND HRGGNNNNHR NGNSNGRRNN 

       790        800 
NNHNSNNNNH STNNNRRSST DRRR 

« Hide

References

[1]"Complete genome sequence of Lactobacillus plantarum JDM1."
Zhang Z.Y., Liu C., Zhu Y.Z., Zhong Y., Zhu Y.Q., Zheng H.J., Zhao G.P., Wang S.Y., Guo X.K.
J. Bacteriol. 191:5020-5021(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDM1 EMBL ACT61549.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001617 Genomic DNA. Translation: ACT61549.1.
RefSeqYP_003062246.1. NC_012984.1.

3D structure databases

ProteinModelPortalC6VM99.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING644042.JDM1_0661.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT61549; ACT61549; JDM1_0661.
GeneID8188662.
KEGGlpj:JDM1_0661.
PATRIC22241855. VBILacPla68346_0659.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0557.
HOGENOMHOG000071119.
KOK12573.
OMAGFFVRLN.
OrthoDBEOG6Q5NRD.
ProtClustDBCLSK821232.

Enzyme and pathway databases

BioCycLPLA644042:GHFY-672-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
HAMAPMF_01895. RNase_R.
InterProIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
IPR013223. RNase_B_OB_dom.
IPR022966. RNase_II/R_CS.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
[Graphical view]
PfamPF08206. OB_RNB. 1 hit.
PF00575. S1. 1 hit.
[Graphical view]
SMARTSM00316. S1. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 4 hits.
TIGRFAMsTIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEPS01175. RIBONUCLEASE_II. 1 hit.
PS50126. S1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6VM99_LACPJ
AccessionPrimary (citable) accession number: C6VM99
Entry history
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: April 16, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)