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C6VIB3 (C6VIB3_LACPJ) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Thymidine kinase RuleBase RU000544

EC=2.7.1.21 RuleBase RU000544
Gene names
Name:tdk EMBL ACT62876.1
Ordered Locus Names:JDM1_1989 EMBL ACT62876.1
OrganismLactobacillus plantarum (strain JDM1) [Complete proteome] [HAMAP] EMBL ACT62876.1
Taxonomic identifier644042 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaeLactobacillus

Protein attributes

Sequence length166 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + thymidine = ADP + thymidine 5'-phosphate. RuleBase RU000544

Sequence similarities

Belongs to the thymidine kinase family.

Ontologies

Keywords
   Biological processDNA synthesis RuleBase RU000544
   LigandATP-binding RuleBase RU000544
Nucleotide-binding
   Molecular functionKinase RuleBase RU000544 EMBL ACT62876.1
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA replication

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

thymidine kinase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C6VIB3 [UniParc].

Last modified September 22, 2009. Version 1.
Checksum: 87AE3A9840B286DB

FASTA16619,161
        10         20         30         40         50         60 
MSRLAQLFFR YGAMNSGKTI EILKVAHNYE EQDKSVIILT SGLDNRDGVG YVASRIGLKR 

        70         80         90        100        110        120 
EATPVFDDTN IFEIVKQTNP DAACVLIDEA QFLKKHHVLE LADIVDELKI PVMTFGLKND 

       130        140        150        160 
FRNELFEGSK YLLLYADKIE EMKTICWFCR KKSNYEFTVP RWSARL 

« Hide

References

[1]"Complete genome sequence of Lactobacillus plantarum JDM1."
Zhang Z.Y., Liu C., Zhu Y.Z., Zhong Y., Zhu Y.Q., Zheng H.J., Zhao G.P., Wang S.Y., Guo X.K.
J. Bacteriol. 191:5020-5021(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDM1 EMBL ACT62876.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001617 Genomic DNA. Translation: ACT62876.1.
RefSeqYP_003063573.1. NC_012984.1.

3D structure databases

ProteinModelPortalC6VIB3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING644042.JDM1_1989.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT62876; ACT62876; JDM1_1989.
GeneID8189937.
KEGGlpj:JDM1_1989.
PATRIC22244654. VBILacPla68346_2002.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1435.
HOGENOMHOG000076391.
KOK00857.
OMARTICHCG.
OrthoDBEOG69D3J2.

Enzyme and pathway databases

BioCycLPLA644042:GHFY-2057-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
InterProIPR027417. P-loop_NTPase.
IPR001267. Thymidine_kinase.
[Graphical view]
PANTHERPTHR11441. PTHR11441. 1 hit.
PfamPF00265. TK. 1 hit.
[Graphical view]
PIRSFPIRSF035805. TK_cell. 1 hit.
SUPFAMSSF52540. SSF52540. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC6VIB3_LACPJ
AccessionPrimary (citable) accession number: C6VIB3
Entry history
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: April 16, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)