Skip Header

Contribute Send feedback
Read comments (?) or add your own

C6UFS5 (C6UFS5_ECOBR) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
General secretory pathway component, cryptic EMBL ACT40825.1
Gene names
Name:gspD EMBL ACT40825.1
Ordered Locus Names:ECB_03176
OrganismEscherichia coli (strain B / REL606) [Complete proteome] [HAMAP] EMBL ACT40825.1
Taxonomic identifier413997 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia ›

Protein attributes

Sequence length650 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subcellular location

Cell outer membrane By similarity RuleBase RU004004.

Sequence similarities

Belongs to the GSP D family. RuleBase RU004003

Ontologies

Keywords
   Biological processTransport RuleBase RU004004
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processprotein secretion by the type II secretion system

Inferred from electronic annotation. Source: InterPro

   Cellular_componentcell outer membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

type II protein secretion system complex

Inferred from electronic annotation. Source: InterPro

   Molecular_functionprotein transporter activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C6UFS5 [UniParc].

Last modified September 22, 2009. Version 1.
Checksum: B483227943A125B7

FASTA65070,724
        10         20         30         40         50         60 
MKGLNKITCC LLAALLMPCA GHAENEQYGA NFNNADIRQF VEIVGQHLGK TILIDPSVQG 

        70         80         90        100        110        120 
TISVRSNDTF SQQEYYQFFL SILDLYGYSV ITLDNGFLKV VRSANVKTSP GMIADSSRPG 

       130        140        150        160        170        180 
VGDELVTRIV PLENVPARDL APLLRQMMDA GSVGNVVHYE PSNVLILTGR ASTINKLIEV 

       190        200        210        220        230        240 
IKRVDVIGTE KQQIIHLEYA SAEDLAEILN QLISESHGKS QMPALLSAKI VADKRTNSLI 

       250        260        270        280        290        300 
ISGPEKARQR ITSLLKSLDV EEIEEGNTRV YYLKYAKATN LVEVLTGVSE KLKDEKGNAR 

       310        320        330        340        350        360 
KPSSSGAMDN VAITADEQTN SLVITADQSV QEKLATVIAR LDIRRAQVLV EAIIVEVQDG 

       370        380        390        400        410        420 
NGLNLGVQWA NKNVGAQQFT NTGLPIFNAA QGVADYKKNG GITSANPAWD MFSAYNGMAA 

       430        440        450        460        470        480 
GFFNGDWGVL LTALASNNKN DILATPSIVT LDNKLASFNV GQDVPVLSGS QTTSGDNVFN 

       490        500        510        520        530        540 
TVERKTVGTK LKVTPQVNEG DAVLLEIEQE VSSVDSSSNS TLGPTFNTRT IQNAVLVKTG 

       550        560        570        580        590        600 
ETVVLGGLLD DFSKEQVSKV PLLGDIPLVG QLFRYTSTER AKRNLMVFIR PTIIRDDDVY 

       610        620        630        640        650 
RSLSKEKYTR YRQEQQQRID GKSKALVGSE DLPVLDENTF NSHAPAPSSR

« Hide

References

[1]"Genome sequences of Escherichia coli B strains REL606 and BL21(DE3)."
Jeong H., Barbe V., Lee C.H., Vallenet D., Yu D.S., Choi S.H., Couloux A., Lee S.W., Yoon S.H., Cattolico L., Hur C.G., Park H.S., Segurens B., Kim S.C., Oh T.K., Lenski R.E., Studier F.W., Daegelen P., Kim J.F.
J. Mol. Biol. 394:644-652(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: B / REL606.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000819 Genomic DNA. Translation: ACT40825.1.
RefSeqYP_003046361.1. NC_012967.1.

3D structure databases

ProteinModelPortalC6UFS5.
ModBaseSearch...

Protein-protein interaction databases

STRING413997.ECB_03176.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT40825; ACT40825; ECB_03176.
GeneID8177453.
KEGGebr:ECB_03176.
PATRIC18238670. VBIEscCol118196_3324.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1450.
HOGENOMHOG000253751.
KOK02453.
OMAIAAGFYQ.
ProtClustDBCLSK908277.

Family and domain databases

InterProIPR001775. GspD/PilQ.
IPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR013356. T2SS_GspD.
IPR004845. T2SS_GspD_CS.
[Graphical view]
PfamPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 3 hits.
[Graphical view]
PRINTSPR00811. BCTERIALGSPD.
TIGRFAMsTIGR02517. type_II_gspD. 1 hit.
PROSITEPS00875. T2SP_D. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6UFS5_ECOBR
AccessionPrimary (citable) accession number: C6UFS5
Entry history
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info