C6UDS1 (C6UDS1_ECOBR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted pectinesterase EMBL ACT38407.1

Gene names

Name:	ybhC EMBL ACT38407.1
Ordered Locus Names:	ECB_00725

Organism

Escherichia coli (strain B / REL606) [Complete proteome] [HAMAP] EMBL ACT38407.1

Taxonomic identifier

413997 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli › Escherichia coli B

Protein attributes

Sequence length	427 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pectinesterase family. RuleBase RU004180

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	cell wall modification Inferred from electronic annotation. Source: InterPro
Cellular_component	cell wall Inferred from electronic annotation. Source: InterPro
Molecular_function	pectinesterase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6UDS1 [UniParc]. Last modified September 22, 2009. Version 1. Checksum: B8DE1E5AE13F9FF2	FASTA	427	46,096
	10 20 30 40 50 60 MNTFSVSRLA LALAFGVTLT ACSSTPPDQR PSDQTAPGTS SRPILSAKEA QNFDAQHYFA 70 80 90 100 110 120 SLTPGAAAWN PSPITLPAQP EFVVGPAGTQ GVTHTTIQAA VDAAIIKRTN KRQYIAVMPG 130 140 150 160 170 180 EYQGTVYVPA APGGITLYGT GEKPIDVKIG LSLDGGMSPA DWRHDVNPRG KYMPGKPAWY 190 200 210 220 230 240 MYDSCQSKRS DSIGVLCSAV FWSQNNGLQL QNLTIENTLG DSVDAGNHPA VALRTDGDQV 250 260 270 280 290 300 QINNVNILGR QNTFFVTNSG VQNRLETNRQ PRTLVTNSYI EGDVDIVSGR GAVVFDNTEF 310 320 330 340 350 360 RVVNSRTQQE AYVFAPATLS NIYYGFLAVN SRFNAFGDGV AQLGRSLDVD ANTNGQVVIR 370 380 390 400 410 420 DSAINEGFNT AKPWADAVIS NRPFAGNTGS VDDNDEIQRN LNDTNYNRMW EYNNRGVGSK VVAEAKK

References

[1]

"Genome sequences of Escherichia coli B strains REL606 and BL21(DE3)." Jeong H., Barbe V., Lee C.H., Vallenet D., Yu D.S., Choi S.H., Couloux A., Lee S.W., Yoon S.H., Cattolico L., Hur C.G., Park H.S., Segurens B., Kim S.C., Oh T.K., Lenski R.E., Studier F.W., Daegelen P., Kim J.F. J. Mol. Biol. 394:644-652(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: B / REL606.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000819 Genomic DNA. Translation: ACT38407.1.
RefSeq	YP_003043943.1. NC_012967.1.
3D structure databases
ProteinModelPortal	C6UDS1.
ModBase	Search...
Protein-protein interaction databases
STRING	413997.ECB_00725.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACT38407; ACT38407; ECB_00725.
GeneID	8178393.
KEGG	ebr:ECB_00725.
PATRIC	18233465. VBIEscCol118196_0769.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG4677.
HOGENOM	HOG000118057.
KO	K01051.
OMA	FNRMWEY.
ProtClustDB	PRK10531.
Family and domain databases
Gene3D	2.160.20.10. 1 hit.
InterPro	IPR012334. Pectin_lyas_fold. IPR011050. Pectin_lyase_fold/virulence. IPR018040. Pectinesterase_AS. IPR000070. Pectinesterase_cat. [Graphical view]
Pfam	PF01095. Pectinesterase. 1 hit. [Graphical view]
SUPFAM	SSF51126. Pectin_lyas_like. 1 hit.
PROSITE	PS00503. PECTINESTERASE_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6UDS1_ECOBR

Accession

Primary (citable) accession number: C6UDS1

Entry history

Integrated into UniProtKB/TrEMBL:	September 22, 2009
Last sequence update:	September 22, 2009
Last modified:	May 1, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)