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Protein

Glutamate decarboxylase

Gene
N/A
Organism
Glycine max (Soybean) (Glycine hispida)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
ProteomesiUP000008827 Componenti: Chromosome 5

Interactioni

Protein-protein interaction databases

STRINGi3847.GLYMA05G26660.1.

Structurei

3D structure databases

ProteinModelPortaliC6TF12.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

InParanoidiC6TF12.
KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

C6TF12-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVFPKPSSES DLFLYSNFAS RYARDSLPRF SMPENSMPKE AAYQNIHDEL
60 70 80 90 100
QLDAIPKLNL ASFVTTSMEE ECNKLIMESI NKNYVDMDEY PATTDLHNRC
110 120 130 140 150
VNMIARMFHA EIGENENAIG AGTVGSSEAI MLAGLAFKKK WQNKRKAEGK
160 170 180 190 200
PYDKPNLVTG SNVQVCWEKF ARYFEVELRE VEVREGYYVM DPVKAVELVD
210 220 230 240 250
ENTICVAAIL GSTYNGEFED VKLLNDQLLE KNKQTGWDTP IHVDAASGGF
260 270 280 290 300
IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RTKDDLPEDL
310 320 330 340 350
VFHINYLGAD QPTFTLNFSK GSSQIIAQYY QLIRLGHEGY RSIMENCRDN
360 370 380 390 400
AMVLKESLEK SGHFNILSKD NGVPVVAFSL KDRSRYDEFK ISEMLRRHGW
410 420 430 440 450
IVPAYPMPPA AQHINVLRVV VRAEFSRTLA ERLVFDIYNV LHELEKLHPP
460 470 480 490
KVTKNTKEEN KAMVENGVKN TALDAHREII AQESNKRQKI MAA
Length:493
Mass (Da):56,207
Last modified:September 22, 2009 - v1
Checksum:iFEEBBF4361583924
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT096189 mRNA. Translation: ACU20414.1.
RefSeqiNP_001241161.1. NM_001254232.2.
UniGeneiGma.53739.

Genome annotation databases

EnsemblPlantsiGLYMA05G26660.1; GLYMA05G26660.1; GLYMA05G26660.
GeneIDi100812201.
KEGGigmx:100812201.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT096189 mRNA. Translation: ACU20414.1.
RefSeqiNP_001241161.1. NM_001254232.2.
UniGeneiGma.53739.

3D structure databases

ProteinModelPortaliC6TF12.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3847.GLYMA05G26660.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiGLYMA05G26660.1; GLYMA05G26660.1; GLYMA05G26660.
GeneIDi100812201.
KEGGigmx:100812201.

Phylogenomic databases

InParanoidiC6TF12.
KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cheung F., Xiao Y., Chan A., Moskal W., Town C.D.
    Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Williams 82Imported.
  3. EnsemblPlants
    Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases
    Cited for: IDENTIFICATION.
    Strain: Williams 82Imported.

Entry informationi

Entry nameiC6TF12_SOYBN
AccessioniPrimary (citable) accession number: C6TF12
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: June 24, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.