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C6EJI7

- C6EJI7_ECOBD

UniProt

C6EJI7 - C6EJI7_ECOBD

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Protein
Submitted name: Transcriptional regulator, LacI family
Gene
ECBD_2908, ECBD_3312
Organism
Escherichia coli (strain B / BL21-DE3)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotations

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotations

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, LacI familyImported
Gene namesi
Ordered Locus Names:ECBD_2908Imported, ECBD_3312Imported
OrganismiEscherichia coli (strain B / BL21-DE3)
Taxonomic identifieri469008 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000002032: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi469008.ECBD_3312.

Structurei

3D structure databases

ProteinModelPortaliC6EJI7.
SMRiC6EJI7. Positions 5-359.

Family & Domainsi

Sequence similaritiesi

Contains HTH lacI-type DNA-binding domain.SAAS annotations

Phylogenomic databases

HOGENOMiHOG000220179.
OMAiNISYNES.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR010982. Lambda_DNA-bd_dom.
IPR028082. Peripla_BP_I.
IPR000843. Tscrpt_reg_HTH_LacI.
[Graphical view]
PfamiPF00356. LacI. 1 hit.
[Graphical view]
PRINTSiPR00036. HTHLACI.
SMARTiSM00354. HTH_LACI. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
SSF53822. SSF53822. 1 hit.
PROSITEiPS00356. HTH_LACI_1. 1 hit.
PS50932. HTH_LACI_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6EJI7-1 [UniParc]FASTAAdd to Basket

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MVNVKPVTLY DVAEYAGVSY QTVSRVVNQA SHVSAKTREK VEAAMAELNY    50
IPNRVAQQLA GKQSLLIGVA TSSLALHAPS QIVAAIKSRA DQLGASVVVS 100
MVERSGVEAC KAAVHNLLAQ RVSGLIINYP LDDQDAIAVE AACTNVPALF 150
LDVSDQTPIN SIIFSHEDGT RLGVEHLVAL GHQQIALLAG PLSSVSARLR 200
LAGWHKYLTR NQIQPIAERE GDWSAMSGFQ QTMQMLNEGI VPTAMLVAND 250
QMALGAMRAI TESGLRVGAD ISVVGYDDTE DSSCYIPPLT TIKQDFRLLG 300
QTSVDRLLQL SQGQAVKGNQ LLPVSLVKRK TTLAPNTQTA SPRALADSLM 350
QLARQVSRLE SGQ 363
Length:363
Mass (Da):38,903
Last modified:September 1, 2009 - v1
Checksum:i86628A47D03F3F5C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001665 Genomic DNA. Translation: ACT29925.1.
CP001665 Genomic DNA. Translation: ACT30312.1.
RefSeqiYP_003037110.1. NC_012947.1.
YP_003037497.1. NC_012947.1.

Genome annotation databases

EnsemblBacteriaiACT29925; ACT29925; ECBD_2908.
ACT30312; ACT30312; ECBD_3312.
GeneIDi8156215.
8156885.
KEGGiebd:ECBD_2908.
ebd:ECBD_3312.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001665 Genomic DNA. Translation: ACT29925.1 .
CP001665 Genomic DNA. Translation: ACT30312.1 .
RefSeqi YP_003037110.1. NC_012947.1.
YP_003037497.1. NC_012947.1.

3D structure databases

ProteinModelPortali C6EJI7.
SMRi C6EJI7. Positions 5-359.
ModBasei Search...

Protein-protein interaction databases

STRINGi 469008.ECBD_3312.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACT29925 ; ACT29925 ; ECBD_2908 .
ACT30312 ; ACT30312 ; ECBD_3312 .
GeneIDi 8156215.
8156885.
KEGGi ebd:ECBD_2908.
ebd:ECBD_3312.

Phylogenomic databases

HOGENOMi HOG000220179.
OMAi NISYNES.

Family and domain databases

Gene3Di 1.10.260.40. 1 hit.
InterProi IPR010982. Lambda_DNA-bd_dom.
IPR028082. Peripla_BP_I.
IPR000843. Tscrpt_reg_HTH_LacI.
[Graphical view ]
Pfami PF00356. LacI. 1 hit.
[Graphical view ]
PRINTSi PR00036. HTHLACI.
SMARTi SM00354. HTH_LACI. 1 hit.
[Graphical view ]
SUPFAMi SSF47413. SSF47413. 1 hit.
SSF53822. SSF53822. 1 hit.
PROSITEi PS00356. HTH_LACI_1. 1 hit.
PS50932. HTH_LACI_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of Escherichia coli 'BL21-Gold(DE3)pLysS AG'."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K.M., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Sorek R., Rubin E.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BL21-GoldImported.
  2. "Complete sequence of Escherichia coli BL21(DE3)."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K.M., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Sorek R., Rubin E.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: B / BL21-DE3 [JGI].

Entry informationi

Entry nameiC6EJI7_ECOBD
AccessioniPrimary (citable) accession number: C6EJI7
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: June 11, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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