C6EJI7 (C6EJI7_ECOBD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcriptional regulator, LacI family EMBL ACT29925.1

Gene names

Ordered Locus Names:

ECBD_2908, ECBD_3312

Organism

Escherichia coli (strain B / BL21-DE3) [Complete proteome] [HAMAP]

Taxonomic identifier

469008 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli

Protein attributes

Sequence length	363 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH lacI-type DNA-binding domain. SAAS SAAS000843

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000708 SAAS SAAS000843
Ligand	DNA-binding SAAS SAAS000843 RuleBase RU000708
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6EJI7 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 86628A47D03F3F5C	FASTA	363	38,903
	10 20 30 40 50 60 MVNVKPVTLY DVAEYAGVSY QTVSRVVNQA SHVSAKTREK VEAAMAELNY IPNRVAQQLA 70 80 90 100 110 120 GKQSLLIGVA TSSLALHAPS QIVAAIKSRA DQLGASVVVS MVERSGVEAC KAAVHNLLAQ 130 140 150 160 170 180 RVSGLIINYP LDDQDAIAVE AACTNVPALF LDVSDQTPIN SIIFSHEDGT RLGVEHLVAL 190 200 210 220 230 240 GHQQIALLAG PLSSVSARLR LAGWHKYLTR NQIQPIAERE GDWSAMSGFQ QTMQMLNEGI 250 260 270 280 290 300 VPTAMLVAND QMALGAMRAI TESGLRVGAD ISVVGYDDTE DSSCYIPPLT TIKQDFRLLG 310 320 330 340 350 360 QTSVDRLLQL SQGQAVKGNQ LLPVSLVKRK TTLAPNTQTA SPRALADSLM QLARQVSRLE SGQ

References

[1]

"Complete sequence of Escherichia coli BL21(DE3)." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K.M., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Sorek R., Rubin E. Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: B / BL21-DE3 [JGI].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001665 Genomic DNA. Translation: ACT29925.1. CP001665 Genomic DNA. Translation: ACT30312.1.
RefSeq	YP_003037110.1. NC_012947.1. YP_003037497.1. NC_012947.1.
3D structure databases
SMR	C6EJI7. Positions 5-359.
ModBase	Search...
Protein-protein interaction databases
STRING	469008.ECBD_3312.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACT29925; ACT29925; ECBD_2908. ACT30312; ACT30312; ECBD_3312.
GeneID	8156215. 8156885.
KEGG	ebd:ECBD_2908. ebd:ECBD_3312.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000220179.
OMA	LNEDIVP.
ProtClustDB	PRK09526.
Family and domain databases
Gene3D	1.10.260.40. 1 hit.
InterPro	IPR026908. LacI. IPR010982. Lambda_DNA-bd_dom. IPR000843. Tscrpt_reg_HTH_LacI. [Graphical view]
PANTHER	PTHR30146:SF1. PTHR30146:SF1. 1 hit.
Pfam	PF00356. LacI. 1 hit. [Graphical view]
PRINTS	PR00036. HTHLACI.
SMART	SM00354. HTH_LACI. 1 hit. [Graphical view]
SUPFAM	SSF47413. Lambda_like_DNA. 1 hit.
PROSITE	PS00356. HTH_LACI_1. 1 hit. PS50932. HTH_LACI_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6EJI7_ECOBD

Accession

Primary (citable) accession number: C6EJI7

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	May 1, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)