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C6EJI7

- C6EJI7_ECOBD

UniProt

C6EJI7 - C6EJI7_ECOBD

Protein
Submitted name:

Transcriptional regulator, LacI family

Gene

ECBD_2908

Organism
Escherichia coli (strain B / BL21-DE3)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (01 Sep 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulationUniRule annotationSAAS annotation

    Keywords - Ligandi

    DNA-bindingUniRule annotationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Transcriptional regulator, LacI familyImported
    Gene namesi
    Ordered Locus Names:ECBD_2908Imported, ECBD_3312Imported
    OrganismiEscherichia coli (strain B / BL21-DE3)Imported
    Taxonomic identifieri469008 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000002032: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi469008.ECBD_3312.

    Structurei

    3D structure databases

    ProteinModelPortaliC6EJI7.
    SMRiC6EJI7. Positions 5-359.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains HTH lacI-type DNA-binding domain.SAAS annotation

    Phylogenomic databases

    HOGENOMiHOG000220179.
    OMAiNISYNES.

    Family and domain databases

    Gene3Di1.10.260.40. 1 hit.
    InterProiIPR010982. Lambda_DNA-bd_dom.
    IPR028082. Peripla_BP_I.
    IPR000843. Tscrpt_reg_HTH_LacI.
    [Graphical view]
    PfamiPF00356. LacI. 1 hit.
    [Graphical view]
    PRINTSiPR00036. HTHLACI.
    SMARTiSM00354. HTH_LACI. 1 hit.
    [Graphical view]
    SUPFAMiSSF47413. SSF47413. 1 hit.
    SSF53822. SSF53822. 1 hit.
    PROSITEiPS00356. HTH_LACI_1. 1 hit.
    PS50932. HTH_LACI_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C6EJI7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVNVKPVTLY DVAEYAGVSY QTVSRVVNQA SHVSAKTREK VEAAMAELNY    50
    IPNRVAQQLA GKQSLLIGVA TSSLALHAPS QIVAAIKSRA DQLGASVVVS 100
    MVERSGVEAC KAAVHNLLAQ RVSGLIINYP LDDQDAIAVE AACTNVPALF 150
    LDVSDQTPIN SIIFSHEDGT RLGVEHLVAL GHQQIALLAG PLSSVSARLR 200
    LAGWHKYLTR NQIQPIAERE GDWSAMSGFQ QTMQMLNEGI VPTAMLVAND 250
    QMALGAMRAI TESGLRVGAD ISVVGYDDTE DSSCYIPPLT TIKQDFRLLG 300
    QTSVDRLLQL SQGQAVKGNQ LLPVSLVKRK TTLAPNTQTA SPRALADSLM 350
    QLARQVSRLE SGQ 363
    Length:363
    Mass (Da):38,903
    Last modified:September 1, 2009 - v1
    Checksum:i86628A47D03F3F5C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001665 Genomic DNA. Translation: ACT29925.1.
    CP001665 Genomic DNA. Translation: ACT30312.1.
    RefSeqiYP_003037110.1. NC_012947.1.
    YP_003037497.1. NC_012947.1.

    Genome annotation databases

    EnsemblBacteriaiACT29925; ACT29925; ECBD_2908.
    ACT30312; ACT30312; ECBD_3312.
    GeneIDi8156215.
    8156885.
    KEGGiebd:ECBD_2908.
    ebd:ECBD_3312.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001665 Genomic DNA. Translation: ACT29925.1 .
    CP001665 Genomic DNA. Translation: ACT30312.1 .
    RefSeqi YP_003037110.1. NC_012947.1.
    YP_003037497.1. NC_012947.1.

    3D structure databases

    ProteinModelPortali C6EJI7.
    SMRi C6EJI7. Positions 5-359.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 469008.ECBD_3312.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACT29925 ; ACT29925 ; ECBD_2908 .
    ACT30312 ; ACT30312 ; ECBD_3312 .
    GeneIDi 8156215.
    8156885.
    KEGGi ebd:ECBD_2908.
    ebd:ECBD_3312.

    Phylogenomic databases

    HOGENOMi HOG000220179.
    OMAi NISYNES.

    Family and domain databases

    Gene3Di 1.10.260.40. 1 hit.
    InterProi IPR010982. Lambda_DNA-bd_dom.
    IPR028082. Peripla_BP_I.
    IPR000843. Tscrpt_reg_HTH_LacI.
    [Graphical view ]
    Pfami PF00356. LacI. 1 hit.
    [Graphical view ]
    PRINTSi PR00036. HTHLACI.
    SMARTi SM00354. HTH_LACI. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47413. SSF47413. 1 hit.
    SSF53822. SSF53822. 1 hit.
    PROSITEi PS00356. HTH_LACI_1. 1 hit.
    PS50932. HTH_LACI_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Escherichia coli 'BL21-Gold(DE3)pLysS AG'."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K.M., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Sorek R., Rubin E.
      Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BL21-GoldImported.
    2. "Complete sequence of Escherichia coli BL21(DE3)."
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K.M., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Sorek R., Rubin E.
      Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: B / BL21-DE3 [JGI]Imported.

    Entry informationi

    Entry nameiC6EJI7_ECOBD
    AccessioniPrimary (citable) accession number: C6EJI7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 1, 2009
    Last sequence update: September 1, 2009
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3