Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Transcriptional regulator, LacI family

Gene

ECBD_2908

Organism
Escherichia coli (strain B / BL21-DE3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, LacI familyImported
Gene namesi
Ordered Locus Names:ECBD_2908Imported, ECBD_3312Imported
OrganismiEscherichia coli (strain B / BL21-DE3)Imported
Taxonomic identifieri469008 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000002032 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi469008.ECBD_3312.

Structurei

3D structure databases

ProteinModelPortaliC6EJI7.
SMRiC6EJI7. Positions 5-359.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains HTH lacI-type DNA-binding domain.SAAS annotation

Phylogenomic databases

HOGENOMiHOG000220179.
OMAiDITISRY.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR010982. Lambda_DNA-bd_dom.
IPR028082. Peripla_BP_I.
IPR000843. Tscrpt_reg_HTH_LacI.
[Graphical view]
PfamiPF00356. LacI. 1 hit.
[Graphical view]
PRINTSiPR00036. HTHLACI.
SMARTiSM00354. HTH_LACI. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
SSF53822. SSF53822. 1 hit.
PROSITEiPS00356. HTH_LACI_1. 1 hit.
PS50932. HTH_LACI_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6EJI7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVNVKPVTLY DVAEYAGVSY QTVSRVVNQA SHVSAKTREK VEAAMAELNY
60 70 80 90 100
IPNRVAQQLA GKQSLLIGVA TSSLALHAPS QIVAAIKSRA DQLGASVVVS
110 120 130 140 150
MVERSGVEAC KAAVHNLLAQ RVSGLIINYP LDDQDAIAVE AACTNVPALF
160 170 180 190 200
LDVSDQTPIN SIIFSHEDGT RLGVEHLVAL GHQQIALLAG PLSSVSARLR
210 220 230 240 250
LAGWHKYLTR NQIQPIAERE GDWSAMSGFQ QTMQMLNEGI VPTAMLVAND
260 270 280 290 300
QMALGAMRAI TESGLRVGAD ISVVGYDDTE DSSCYIPPLT TIKQDFRLLG
310 320 330 340 350
QTSVDRLLQL SQGQAVKGNQ LLPVSLVKRK TTLAPNTQTA SPRALADSLM
360
QLARQVSRLE SGQ
Length:363
Mass (Da):38,903
Last modified:September 1, 2009 - v1
Checksum:i86628A47D03F3F5C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001665 Genomic DNA. Translation: ACT29925.1.
CP001665 Genomic DNA. Translation: ACT30312.1.
RefSeqiYP_003037110.1. NC_012947.1.
YP_003037497.1. NC_012947.1.

Genome annotation databases

EnsemblBacteriaiACT29925; ACT29925; ECBD_2908.
ACT30312; ACT30312; ECBD_3312.
KEGGiebd:ECBD_2908.
ebd:ECBD_3312.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001665 Genomic DNA. Translation: ACT29925.1.
CP001665 Genomic DNA. Translation: ACT30312.1.
RefSeqiYP_003037110.1. NC_012947.1.
YP_003037497.1. NC_012947.1.

3D structure databases

ProteinModelPortaliC6EJI7.
SMRiC6EJI7. Positions 5-359.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi469008.ECBD_3312.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACT29925; ACT29925; ECBD_2908.
ACT30312; ACT30312; ECBD_3312.
KEGGiebd:ECBD_2908.
ebd:ECBD_3312.

Phylogenomic databases

HOGENOMiHOG000220179.
OMAiDITISRY.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR010982. Lambda_DNA-bd_dom.
IPR028082. Peripla_BP_I.
IPR000843. Tscrpt_reg_HTH_LacI.
[Graphical view]
PfamiPF00356. LacI. 1 hit.
[Graphical view]
PRINTSiPR00036. HTHLACI.
SMARTiSM00354. HTH_LACI. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
SSF53822. SSF53822. 1 hit.
PROSITEiPS00356. HTH_LACI_1. 1 hit.
PS50932. HTH_LACI_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of Escherichia coli 'BL21-Gold(DE3)pLysS AG'."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K.M., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Sorek R., Rubin E.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BL21-GoldImported.
  2. "Complete sequence of Escherichia coli BL21(DE3)."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K.M., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Sorek R., Rubin E.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: B / BL21-DE3 [JGI]Imported.

Entry informationi

Entry nameiC6EJI7_ECOBD
AccessioniPrimary (citable) accession number: C6EJI7
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: April 1, 2015
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.