C6EH60 (C6EH60_ECOBD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S15 RuleBase RU003920 HAMAP-Rule MF_01343

Gene names

Name:	rpsO HAMAP-Rule MF_01343 EMBL ACT44836.1
Ordered Locus Names:	B21_02983, ECBD_0575, ECD_03032

Organism

Escherichia coli (strain B / BL21-DE3) [Complete proteome] [HAMAP]

Taxonomic identifier

469008 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli

Protein attributes

Sequence length	89 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome By similarity. HAMAP-Rule MF_01343 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA By similarity. HAMAP-Rule MF_01343
Subunit structure	Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA By similarity. HAMAP-Rule MF_01343
Sequence similarities	Belongs to the ribosomal protein S15P family. HAMAP-Rule MF_01343 RuleBase RU003919

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding RuleBase RU004524 HAMAP-Rule MF_01343
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP-Rule MF_01343 RuleBase RU003919 EMBL ACT27645.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6EH60 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: AABDDA6674B99B1C	FASTA	89	10,269
	10 20 30 40 50 60 MSLSTEATAK IVSEFGRDAN DTGSTEVQVA LLTAQINHLQ GHFAEHKKDH HSRRGLLRMV 70 80 SQRRKLLDYL KRKDVARYTQ LIERLGLRR

References

[1]	"Genome sequences of Escherichia coli B strains REL606 and BL21(DE3)." Jeong H., Barbe V., Lee C.H., Vallenet D., Yu D.S., Choi S.H., Couloux A., Lee S.W., Yoon S.H., Cattolico L., Hur C.G., Park H.S., Segurens B., Kim S.C., Oh T.K., Lenski R.E., Studier F.W., Daegelen P., Kim J.F. J. Mol. Biol. 394:644-652(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: B / BL21-DE3 [Korea].
[2]	"Sequencing and gene expression analysis of Escherichia coli BL21." Leparc G., Striedner G., Bayer K., Kreil D., Krempl P.M. Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: B / BL21-DE3 [Austria].
[3]	"Complete sequence of Escherichia coli BL21(DE3)." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K.M., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Sorek R., Rubin E. Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: B / BL21-DE3 [JGI].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001665 Genomic DNA. Translation: ACT27645.1. CP001509 Genomic DNA. Translation: ACT44836.1. AM946981 Genomic DNA. Translation: CAQ33500.1.
RefSeq	YP_003000741.1. NC_012892.2. YP_003034830.1. NC_012947.1. YP_003055607.1. NC_012971.2.
3D structure databases
SMR	C6EH60. Positions 3-88.
ModBase	Search...
Protein-protein interaction databases
STRING	469008.ECBD_0575.
Proteomic databases
PRIDE	C6EH60.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACT27645; ACT27645; ECBD_0575. ACT44836; ACT44836; ECD_03032. CAQ33500; CAQ33500; B21_02983.
GeneID	8114461. 8158756. 8179928.
KEGG	ebd:ECBD_0575. ebe:B21_02983. ebl:ECD_03032.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0184.
HOGENOM	HOG000040097.
KO	K02956.
OMA	LKMVSRR.
ProtClustDB	PRK05626.
Family and domain databases
Gene3D	1.10.287.10. 1 hit.
HAMAP	MF_01343_B. Ribosomal_S15_S13e_B.
InterPro	IPR000589. Ribosomal_S15. IPR005290. Ribosomal_S15_bac-type. IPR009068. S15_NS1_RNA-bd. [Graphical view]
PANTHER	PTHR23321:SF10. PTHR23321:SF10. 1 hit.
Pfam	PF00312. Ribosomal_S15. 1 hit. [Graphical view]
SUPFAM	SSF47060. S15/NS1_bind. 1 hit.
TIGRFAMs	TIGR00952. S15_bact. 1 hit.
PROSITE	PS00362. RIBOSOMAL_S15. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6EH60_ECOBD

Accession

Primary (citable) accession number: C6EH60
Secondary accession number(s): C5W9B4

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	May 1, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)