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C6EH60

- C6EH60_ECOBD

UniProt

C6EH60 - C6EH60_ECOBD

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Protein
30S ribosomal protein S15
Gene
rpsO, B21_02983, ECBD_0575, ECD_03032
Organism
Escherichia coli (strain B / BL21-DE3)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome By similarity.UniRule annotation
One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA By similarity.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

Keywords - Ligandi

RNA-binding, rRNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S15UniRule annotation
Gene namesi
Name:rpsOUniRule annotationImported
Ordered Locus Names:B21_02983Imported, ECBD_0575Imported, ECD_03032Imported
OrganismiEscherichia coli (strain B / BL21-DE3)
Taxonomic identifieri469008 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000001509: Chromosome, UP000002032: Chromosome, UP000009074: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi469008.ECBD_0575.

Structurei

3D structure databases

ProteinModelPortaliC6EH60.
SMRiC6EH60. Positions 3-88.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0184.
HOGENOMiHOG000040097.
KOiK02956.
OMAiNKQDHHS.

Family and domain databases

Gene3Di1.10.287.10. 1 hit.
HAMAPiMF_01343_B. Ribosomal_S15_B.
InterProiIPR000589. Ribosomal_S15.
IPR005290. Ribosomal_S15_bac-type.
IPR009068. S15_NS1_RNA-bd.
[Graphical view]
PfamiPF00312. Ribosomal_S15. 1 hit.
[Graphical view]
SUPFAMiSSF47060. SSF47060. 1 hit.
TIGRFAMsiTIGR00952. S15_bact. 1 hit.
PROSITEiPS00362. RIBOSOMAL_S15. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6EH60-1 [UniParc]FASTAAdd to Basket

« Hide

MSLSTEATAK IVSEFGRDAN DTGSTEVQVA LLTAQINHLQ GHFAEHKKDH   50
HSRRGLLRMV SQRRKLLDYL KRKDVARYTQ LIERLGLRR 89
Length:89
Mass (Da):10,269
Last modified:September 1, 2009 - v1
Checksum:iAABDDA6674B99B1C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001665 Genomic DNA. Translation: ACT27645.1.
CP001509 Genomic DNA. Translation: ACT44836.1.
AM946981 Genomic DNA. Translation: CAQ33500.1.
RefSeqiYP_003000741.1. NC_012892.2.
YP_003034830.1. NC_012947.1.
YP_003055607.1. NC_012971.2.

Genome annotation databases

EnsemblBacteriaiACT27645; ACT27645; ECBD_0575.
ACT44836; ACT44836; ECD_03032.
CAQ33500; CAQ33500; B21_02983.
GeneIDi8114461.
8158756.
8179928.
KEGGiebd:ECBD_0575.
ebe:B21_02983.
ebl:ECD_03032.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001665 Genomic DNA. Translation: ACT27645.1 .
CP001509 Genomic DNA. Translation: ACT44836.1 .
AM946981 Genomic DNA. Translation: CAQ33500.1 .
RefSeqi YP_003000741.1. NC_012892.2.
YP_003034830.1. NC_012947.1.
YP_003055607.1. NC_012971.2.

3D structure databases

ProteinModelPortali C6EH60.
SMRi C6EH60. Positions 3-88.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 469008.ECBD_0575.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACT27645 ; ACT27645 ; ECBD_0575 .
ACT44836 ; ACT44836 ; ECD_03032 .
CAQ33500 ; CAQ33500 ; B21_02983 .
GeneIDi 8114461.
8158756.
8179928.
KEGGi ebd:ECBD_0575.
ebe:B21_02983.
ebl:ECD_03032.

Phylogenomic databases

eggNOGi COG0184.
HOGENOMi HOG000040097.
KOi K02956.
OMAi NKQDHHS.

Family and domain databases

Gene3Di 1.10.287.10. 1 hit.
HAMAPi MF_01343_B. Ribosomal_S15_B.
InterProi IPR000589. Ribosomal_S15.
IPR005290. Ribosomal_S15_bac-type.
IPR009068. S15_NS1_RNA-bd.
[Graphical view ]
Pfami PF00312. Ribosomal_S15. 1 hit.
[Graphical view ]
SUPFAMi SSF47060. SSF47060. 1 hit.
TIGRFAMsi TIGR00952. S15_bact. 1 hit.
PROSITEi PS00362. RIBOSOMAL_S15. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequencing and gene expression analysis of Escherichia coli BL21(DE3)."
    Krempl P.M., Mairhofer J., Eisenkolb M., Specht T., Leparc G.G., Kreil D.P., Bayer K., Striedner G.
    Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BL21Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: B / BL21-DE3 [Korea] and BL21Imported.
  3. "Sequencing and gene expression analysis of Escherichia coli BL21."
    Leparc G., Striedner G., Bayer K., Kreil D., Krempl P.M.
    Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: B / BL21-DE3 [Austria].
  4. "Complete sequence of Escherichia coli 'BL21-Gold(DE3)pLysS AG'."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K.M., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Sorek R., Rubin E.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BL21-GoldImported.
  5. "Complete sequence of Escherichia coli BL21(DE3)."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K.M., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Sorek R., Rubin E.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: B / BL21-DE3 [JGI].
  6. Jeong H., Shim J.-H., Studier F.W., Oh T.K., Kim J.F.
    Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BL21.

Entry informationi

Entry nameiC6EH60_ECOBD
AccessioniPrimary (citable) accession number: C6EH60
Secondary accession number(s): C5W9B4
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: September 3, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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