C6EH41 (C6EH41_ECOBD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L21 RuleBase RU000562 HAMAP-Rule MF_01363

Gene names

Name:	rplU HAMAP-Rule MF_01363 EMBL ACT44855.1
Ordered Locus Names:	B21_03002, ECBD_0556, ECD_03051

Organism

Escherichia coli (strain B / BL21-DE3) [Complete proteome] [HAMAP]

Taxonomic identifier

469008 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli

Protein attributes

Sequence length	103 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein binds to 23S rRNA in the presence of protein L20 By similarity. RuleBase RU000562 HAMAP-Rule MF_01363
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L20 By similarity. HAMAP-Rule MF_01363 SAAS SAAS018258
Sequence similarities	Belongs to the ribosomal protein L21P family. RuleBase RU000562 HAMAP-Rule MF_01363

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding SAAS SAAS018258 RuleBase RU000562 HAMAP-Rule MF_01363
Molecular function	Ribonucleoprotein Ribosomal protein RuleBase RU000562 HAMAP-Rule MF_01363 SAAS SAAS018258 EMBL ACT27626.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6EH41 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 9221F104EC9C8CDB	FASTA	103	11,564
	10 20 30 40 50 60 MYAVFQSGGK QHRVSEGQTV RLEKLDIATG ETVEFAEVLM IANGEEVKIG VPFVDGGVIK 70 80 90 100 AEVVAHGRGE KVKIVKFRRR KHYRKQQGHR QWFTDVKITG ISA

References

[1]	"Genome sequences of Escherichia coli B strains REL606 and BL21(DE3)." Jeong H., Barbe V., Lee C.H., Vallenet D., Yu D.S., Choi S.H., Couloux A., Lee S.W., Yoon S.H., Cattolico L., Hur C.G., Park H.S., Segurens B., Kim S.C., Oh T.K., Lenski R.E., Studier F.W., Daegelen P., Kim J.F. J. Mol. Biol. 394:644-652(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: B / BL21-DE3 [Korea].
[2]	"Sequencing and gene expression analysis of Escherichia coli BL21." Leparc G., Striedner G., Bayer K., Kreil D., Krempl P.M. Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: B / BL21-DE3 [Austria].
[3]	"Complete sequence of Escherichia coli BL21(DE3)." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K.M., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Sorek R., Rubin E. Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: B / BL21-DE3 [JGI].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001665 Genomic DNA. Translation: ACT27626.1. CP001509 Genomic DNA. Translation: ACT44855.1. AM946981 Genomic DNA. Translation: CAQ33519.1.
RefSeq	YP_003000760.1. NC_012892.2. YP_003034811.1. NC_012947.1. YP_003055626.1. NC_012971.2.
3D structure databases
SMR	C6EH41. Positions 1-103.
ModBase	Search...
Protein-protein interaction databases
STRING	469008.ECBD_0556.
Proteomic databases
PRIDE	C6EH41.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACT27626; ACT27626; ECBD_0556. ACT44855; ACT44855; ECD_03051. CAQ33519; CAQ33519; B21_03002.
GeneID	8115230. 8159068. 8179949.
KEGG	ebd:ECBD_0556. ebe:B21_03002. ebl:ECD_03051.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0261.
HOGENOM	HOG000036265.
KO	K02888.
OMA	KVTIIKF.
ProtClustDB	PRK05573.
Family and domain databases
HAMAP	MF_01363. Ribosomal_L21.
InterPro	IPR001787. Ribosomal_L21. IPR018258. Ribosomal_L21_CS. [Graphical view]
PANTHER	PTHR21349. PTHR21349. 1 hit.
Pfam	PF00829. Ribosomal_L21p. 1 hit. [Graphical view]
TIGRFAMs	TIGR00061. L21. 1 hit.
PROSITE	PS01169. RIBOSOMAL_L21. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6EH41_ECOBD

Accession

Primary (citable) accession number: C6EH41
Secondary accession number(s): C5W9D3

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	May 1, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)