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Protein
Submitted name:

Proton-translocating NADH-quinone oxidoreductase, chain L

Gene

ECBD_1383

Organism
Escherichia coli (strain B / BL21-DE3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Proton-translocating NADH-quinone oxidoreductase, chain LImported
Gene namesi
Ordered Locus Names:ECBD_1383Imported
OrganismiEscherichia coli (strain B / BL21-DE3)Imported
Taxonomic identifieri469008 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000002032 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei29 – 5224HelicalSequence analysisAdd
BLAST
Transmembranei87 – 10418HelicalSequence analysisAdd
BLAST
Transmembranei116 – 13318HelicalSequence analysisAdd
BLAST
Transmembranei139 – 15820HelicalSequence analysisAdd
BLAST
Transmembranei170 – 18920HelicalSequence analysisAdd
BLAST
Transmembranei209 – 22820HelicalSequence analysisAdd
BLAST
Transmembranei249 – 26719HelicalSequence analysisAdd
BLAST
Transmembranei279 – 30022HelicalSequence analysisAdd
BLAST
Transmembranei307 – 32519HelicalSequence analysisAdd
BLAST
Transmembranei331 – 35424HelicalSequence analysisAdd
BLAST
Transmembranei374 – 39219HelicalSequence analysisAdd
BLAST
Transmembranei412 – 43423HelicalSequence analysisAdd
BLAST
Transmembranei455 – 47521HelicalSequence analysisAdd
BLAST
Transmembranei495 – 51319HelicalSequence analysisAdd
BLAST
Transmembranei593 – 61220HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

DIPiDIP-59172N.
STRINGi469008.ECD_02203.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3RKOX-ray3.00B/L1-613[»]
ProteinModelPortaliC6E9S4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini64 – 12158Proton_antipo_NInterPro annotationAdd
BLAST
Domaini133 – 425293Proton_antipo_MInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiCOG1009. LUCA.
ENOG4105D65. Bacteria.
HOGENOMiHOG000100570.
KOiK00341.
OMAiAWEGAIF.

Family and domain databases

InterProiIPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
IPR001750. ND/Mrp_mem.
IPR001516. Proton_antipo_N.
[Graphical view]
PfamiPF00361. Proton_antipo_M. 1 hit.
PF00662. Proton_antipo_N. 1 hit.
[Graphical view]
PRINTSiPR01435. NPOXDRDTASE5.
TIGRFAMsiTIGR01974. NDH_I_L. 1 hit.

Sequencei

Sequence statusi: Complete.

C6E9S4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNMLALTIIL PLIGFVLLAF SRGRWSENVS AIVGVGSVGL AALVTAFIGV
60 70 80 90 100
DFFANGEQTY SQPLWTWMSV GDFNIGFNLV LDGLSLTMLS VVTGVGFLIH
110 120 130 140 150
MYASWYMRGE EGYSRFFAYT NLFIASMVVL VLADNLLLMY LGWEGVGLCS
160 170 180 190 200
YLLIGFYYTD PKNGAAAMKA FVVTRVGDVF LAFALFILYN ELGTLNFREM
210 220 230 240 250
VELAPAHFAD GNNMLMWATL MLLGGAVGKS AQLPLQTWLA DAMAGPTPVS
260 270 280 290 300
ALIHAATMVT AGVYLIARTH GLFLMTPEVL HLVGIVGAVT LLLAGFAALV
310 320 330 340 350
QTDIKRVLAY STMSQIGYMF LALGVQAWDA AIFHLMTHAF FKALLFLASG
360 370 380 390 400
SVILACHHEQ NIFKMGGLRK SIPLVYLCFL VGGAALSALP LVTAGFFSKD
410 420 430 440 450
EILAGAMANG HINLMVAGLV GAFMTSLYTF RMIFIVFHGK EQIHAHAVKG
460 470 480 490 500
VTHSLPLIVL LILSTFVGAL IVPPLQGVLP QTTELAHGSM LTLEITSGVV
510 520 530 540 550
AVVGILLAAW LWLGKRTLVT SIANSAPGRL LSTWWYNAWG FDWLYDKVFV
560 570 580 590 600
KPFLGIAWLL KRDPLNSMMN IPAVLSRFAG KGLLLSENGY LRWYVASMSI
610
GAVVVLALLM VLR
Length:613
Mass (Da):66,468
Last modified:September 1, 2009 - v1
Checksum:i7B6C4F7795E67261
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001665 Genomic DNA. Translation: ACT28446.1.
RefSeqiWP_001056644.1. NC_012971.2.

Genome annotation databases

EnsemblBacteriaiACT28446; ACT28446; ECBD_1383.
KEGGiebd:ECBD_1383.
ebe:B21_02163.
ebl:ECD_02203.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001665 Genomic DNA. Translation: ACT28446.1.
RefSeqiWP_001056644.1. NC_012971.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3RKOX-ray3.00B/L1-613[»]
ProteinModelPortaliC6E9S4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-59172N.
STRINGi469008.ECD_02203.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACT28446; ACT28446; ECBD_1383.
KEGGiebd:ECBD_1383.
ebe:B21_02163.
ebl:ECD_02203.

Phylogenomic databases

eggNOGiCOG1009. LUCA.
ENOG4105D65. Bacteria.
HOGENOMiHOG000100570.
KOiK00341.
OMAiAWEGAIF.

Family and domain databases

InterProiIPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
IPR001750. ND/Mrp_mem.
IPR001516. Proton_antipo_N.
[Graphical view]
PfamiPF00361. Proton_antipo_M. 1 hit.
PF00662. Proton_antipo_N. 1 hit.
[Graphical view]
PRINTSiPR01435. NPOXDRDTASE5.
TIGRFAMsiTIGR01974. NDH_I_L. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of Escherichia coli BL21(DE3)."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K.M., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Sorek R., Rubin E.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: B / BL21-DE3 [JGI]Imported.
  2. "Structure of the membrane domain of respiratory complex I."
    Efremov R.G., Sazanov L.A.
    Nature 476:414-420(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.00 ANGSTROMS).

Entry informationi

Entry nameiC6E9S4_ECOBD
AccessioniPrimary (citable) accession number: C6E9S4
Secondary accession number(s): C5W715
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: December 9, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.