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Protein
Submitted name:

DNA ligase LigD

Gene

TBMG_03775

Organism
Mycobacterium tuberculosis (strain KZN 1435 / MDR)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA primase activity Source: InterPro
  2. ligase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMTUB478434:GH8E-3906-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase LigDImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:TBMG_03775Imported
ORF Names:V460_00154Imported
OrganismiMycobacterium tuberculosis (strain KZN 1435 / MDR)Imported
Taxonomic identifieri478434 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium tuberculosis complex
ProteomesiUP000002737: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi478434.TBMG_03775.

Structurei

3D structure databases

ProteinModelPortaliC6DNH1.
SMRiC6DNH1. Positions 14-298.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
OMAiFHPWPVR.
OrthoDBiEOG6FV833.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

C6DNH1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAAAEELDV DGIAVRLTSP DRMYFPKLGS HGTKRRLVEY YFAVAGGPML
60 70 80 90 100
TALRDRPTHL QRFPDGVDGE QIYQKRIPRH RPDYLQTCRV TFPSGRMADA
110 120 130 140 150
LKVTHPAAIV WAAQMGTITL HPWQVRCPDT EHPDELRIDL DPQPGTGFVE
160 170 180 190 200
ARTVAVDVLR SVLDDLGLVG YPKTSGGRGI HVFLRIATDW DFVEVRRAGI
210 220 230 240 250
ALAREVERRA PDAVTTSWWK EERGARIFID FNQNARDRTM ASAYSVRPTP
260 270 280 290 300
IATVSMPLTW EELAGADPDD YTMTTVPELV KIRDDPWAGM DDVAQSIAPL
310 320 330 340
LDLAAADEER GLGDMPYPPN YPKMPGEPKR VQPSRDTDLK GGNTSK
Length:346
Mass (Da):38,544
Last modified:September 1, 2009 - v1
Checksum:i11E77E93FBCD155B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001658 Genomic DNA. Translation: ACT26883.1.
JLCO01000001 Genomic DNA. Translation: KBN06218.1.
RefSeqiYP_003033778.1. NC_012943.1.

Genome annotation databases

EnsemblBacteriaiACT26883; ACT26883; TBMG_03775.
KBN06218; KBN06218; V460_00154.
GeneIDi8164588.
KEGGimtb:TBMG_03775.
PATRICi18165784. VBIMycTub122270_4173.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001658 Genomic DNA. Translation: ACT26883.1.
JLCO01000001 Genomic DNA. Translation: KBN06218.1.
RefSeqiYP_003033778.1. NC_012943.1.

3D structure databases

ProteinModelPortaliC6DNH1.
SMRiC6DNH1. Positions 14-298.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi478434.TBMG_03775.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACT26883; ACT26883; TBMG_03775.
KBN06218; KBN06218; V460_00154.
GeneIDi8164588.
KEGGimtb:TBMG_03775.
PATRICi18165784. VBIMycTub122270_4173.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
OMAiFHPWPVR.
OrthoDBiEOG6FV833.

Enzyme and pathway databases

BioCyciMTUB478434:GH8E-3906-MONOMER.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: KZN 1435Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KZN 1435 / MDRImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: KZN 1435Imported.

Entry informationi

Entry nameiC6DNH1_MYCTK
AccessioniPrimary (citable) accession number: C6DNH1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: March 4, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.