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Protein

HTH-type transcriptional activator RhaR

Gene

rhaR

Organism
Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Activates expression of the rhaSR operon in response to L-rhamnose.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi197 – 216H-T-H motifUniRule annotationAdd BLAST20
DNA bindingi246 – 269H-T-H motifUniRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processRhamnose metabolism, Transcription, Transcription regulation

Enzyme and pathway databases

BioCyciPCAR561230:G1GF8-429-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional activator RhaRUniRule annotation
Alternative name(s):
L-rhamnose operon transcriptional activator RhaRUniRule annotation
Gene namesi
Name:rhaRUniRule annotation
Ordered Locus Names:PC1_0422
OrganismiPectobacterium carotovorum subsp. carotovorum (strain PC1)
Taxonomic identifieri561230 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesPectobacteriaceaePectobacterium
Proteomesi
  • UP000002736 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10002154031 – 284HTH-type transcriptional activator RhaRAdd BLAST284

Interactioni

Subunit structurei

Binds DNA as a dimer.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei248Interaction with sigma-70UniRule annotation1

Protein-protein interaction databases

STRINGi561230.PC1_0422

Structurei

3D structure databases

ProteinModelPortaliC6DJR5
SMRiC6DJR5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4108BRW Bacteria
ENOG410XYX0 LUCA
HOGENOMiHOG000290513
KOiK02854
OMAiNREVGMT
OrthoDBiPOG091H039M

Family and domain databases

Gene3Di2.60.120.10, 1 hit
HAMAPiMF_01533 HTH_type_RhaR, 1 hit
InterProiView protein in InterPro
IPR003313 AraC-bd
IPR018060 HTH_AraC
IPR014710 RmlC-like_jellyroll
IPR023699 Tscrpt_act_RhaR
IPR020449 Tscrpt_reg_HTH_AraC-type
PfamiView protein in Pfam
PF02311 AraC_binding, 1 hit
PF12833 HTH_18, 1 hit
PRINTSiPR00032 HTHARAC
SMARTiView protein in SMART
SM00342 HTH_ARAC, 1 hit
PROSITEiView protein in PROSITE
PS01124 HTH_ARAC_FAMILY_2, 1 hit

Sequencei

Sequence statusi: Complete.

C6DJR5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATAVRGLKL QTEDYFLTDK NVVMVAERHP QPVFPLHHHD FDELVIVWRG
60 70 80 90 100
NGLHLWNDVP YRITRGDMFY VSANDRHSYE SVHGLELDNI LYIRNRLTLS
110 120 130 140 150
ADWQRLLPGG EHPQSQRHWC LGSEGMDTLR EKVDALRQEC MKSDALSLQL
160 170 180 190 200
SEALLLQIAL LAARYRHTPD NPQLADAHQL DMLMNALRAS IAAPFRFEAF
210 220 230 240 250
CEQHHFSARS LRSRFKEQTG MSVPHYLRQL RLCKAMELLR YDLQTIGDIA
260 270 280
ALCGFEDSNY FSVVFHQAFG VSPSAYRQRF LNVE
Length:284
Mass (Da):32,839
Last modified:September 1, 2009 - v1
Checksum:i3D7E5367DE6D8597
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001657 Genomic DNA Translation: ACT11478.1
RefSeqiWP_012773134.1, NC_012917.1

Genome annotation databases

EnsemblBacteriaiACT11478; ACT11478; PC1_0422
GeneIDi29703394
KEGGipct:PC1_0422

Similar proteinsi

Entry informationi

Entry nameiRHAR_PECCP
AccessioniPrimary (citable) accession number: C6DJR5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: September 1, 2009
Last modified: March 28, 2018
This is version 65 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

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