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Protein
Submitted name:

Type III secretion outer membrane pore, YscC/HrcC family

Gene

PC1_2192

Organism
Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciPCAR561230:GKCK-2237-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Type III secretion outer membrane pore, YscC/HrcC familyImported
Gene namesi
Ordered Locus Names:PC1_2192Imported
OrganismiPectobacterium carotovorum subsp. carotovorum (strain PC1)Imported
Taxonomic identifieri561230 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
Proteomesi
  • UP000002736 Componenti: Chromosome

Subcellular locationi

  • Cell outer membrane UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi561230.PC1_2192.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini194 – 320127Secretin_NInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000270092.
KOiK03219.
OMAiNAVIVHD.
OrthoDBiPOG091H00DF.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR010563. Pilus_assembly_TraK.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
PF06586. TraK. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.

Sequencei

Sequence statusi: Complete.

C6DI58-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRKGLMRHRS YSILLVVYRW FCWAVVLMGI IPMNGVISLA HAATPADWNK
60 70 80 90 100
GAYAYSAEQT PLSAILTDFA NSHGVDLVLG NIADNDVTAK IRAETPVLFL
110 120 130 140 150
DRLALEHRFQ WFVYNNALYV SPQDEQASVR LEISPDAAPD IKQALSGIGL
160 170 180 190 200
LDARFGWGEL PEEGVVLVTG PQAYIDLIRN FSQQREKQDE RRKVMIFPLR
210 220 230 240 250
YASVSDRTLQ YRDQKVTIPG VATILNELMD GQRAAPAGAS GPMPVQPDTG
260 270 280 290 300
MEAMRDSTRS LMTRLATRNN PGRSGDASSR VTLSGKISAD VRNNALLIRD
310 320 330 340 350
DEKRRAEYQQ LVDHIDVPQN LVNIDAIILD VDRTALSRLE ANWQAQLGNV
360 370 380 390 400
SAGSTMMMGR STLFVSDFKR FFADIQALEG EGTASIVANP SVLTLENQPA
410 420 430 440 450
IVDFSRTAFI TATGERVADI QPVTAGTSLQ VTPRVVGEGA QRSIQLVIDI
460 470 480 490 500
EDGQVETGRE GEASGVKRGT VSTQALIGEN RALVLGGFHV EESGDRDRRI
510 520 530 540 550
PILGDIPLLG KLFTSTRHEV SRRERLFILT PHLVGDQTDP TRYVSSANRQ
560 570 580 590 600
QLNGAMNRVA QRNGKTDLYS LIEGAFRDLA SRQLPAGFKT VSNGARLGEV
610 620 630 640 650
CRSQSGLIYD SSRYQWYDNG QVRLSVGVVR NGGTQPQRFD EAACASSRTL
660 670 680
AVAVWPKTTL APGESSEVFL ALQPALASQT ARRHVLTSR
Length:689
Mass (Da):75,588
Last modified:September 1, 2009 - v1
Checksum:i3E87C00630185F36
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001657 Genomic DNA. Translation: ACT13231.1.
RefSeqiWP_015840421.1. NC_012917.1.

Genome annotation databases

EnsemblBacteriaiACT13231; ACT13231; PC1_2192.
KEGGipct:PC1_2192.
PATRICi20489032. VBIPecCar70489_2202.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001657 Genomic DNA. Translation: ACT13231.1.
RefSeqiWP_015840421.1. NC_012917.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi561230.PC1_2192.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACT13231; ACT13231; PC1_2192.
KEGGipct:PC1_2192.
PATRICi20489032. VBIPecCar70489_2202.

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000270092.
KOiK03219.
OMAiNAVIVHD.
OrthoDBiPOG091H00DF.

Enzyme and pathway databases

BioCyciPCAR561230:GKCK-2237-MONOMER.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR010563. Pilus_assembly_TraK.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
PF06586. TraK. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiC6DI58_PECCP
AccessioniPrimary (citable) accession number: C6DI58
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: September 7, 2016
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.