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Protein
Submitted name:

Glycoside hydrolase family 1

Gene

PC1_2140

Organism
Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Enzyme and pathway databases

BioCyciPCAR561230:GKCK-2185-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Glycoside hydrolase family 1Imported
Gene namesi
Ordered Locus Names:PC1_2140Imported
OrganismiPectobacterium carotovorum subsp. carotovorum (strain PC1)Imported
Taxonomic identifieri561230 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
ProteomesiUP000002736 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi561230.PC1_2140.

Structurei

3D structure databases

ProteinModelPortaliC6DI06.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 1 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG2723.
HOGENOMiHOG000088631.
KOiK01223.
OMAiARYARTC.
OrthoDBiEOG6F81PM.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR001360. Glyco_hydro_1.
IPR018120. Glyco_hydro_1_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10353. PTHR10353. 1 hit.
PfamiPF00232. Glyco_hydro_1. 1 hit.
[Graphical view]
PRINTSiPR00131. GLHYDRLASE1.
SUPFAMiSSF51445. SSF51445. 1 hit.
PROSITEiPS00572. GLYCOSYL_HYDROL_F1_1. 1 hit.
PS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6DI06-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSASTFPNGF LWGGAIAANQ AEGAYLEGGK GLTTVDMIPH GVNRLPVKLG
60 70 80 90 100
QEPRFALRED EFYPSHQAID FYHRYKEDIA LMAEMGFTVF RTSIAWSRLY
110 120 130 140 150
PNGDELTPNA EGIAFYRDMF AECKKYNIEP LVTLCHFDVP MHLVTEYGSW
160 170 180 190 200
RNRKMVEFFA RYARTCFEAF DGLVKYWLTF NEINILLHSP FSGAGLVFAE
210 220 230 240 250
GENQEQVKYQ AAHHELVASA LATKIAHEVN PENQVGCMLA GGNFYPWSCK
260 270 280 290 300
PEDVWAALNK DRENLFFIDV QARGTYPAYT GRLFKEKGIT IASEPGDDEI
310 320 330 340 350
LKNTVDFVSF SYYASRCASA DMNEHNSSAA NIVKSLKNPH IKASEWGWGI
360 370 380 390 400
DPLGLRITMN MMYDRYQKPL FLVENGLGAK DEINAQGEID DDYRISYLRE
410 420 430 440 450
HISAVADAIG DGIPVIGYTS WGCIDLVAAS TGEMSKRYGF IYVDRDDRGE
460 470
GTLARKKKKS FYWYKKVIAS NGADLS
Length:476
Mass (Da):53,594
Last modified:September 1, 2009 - v1
Checksum:i06AB2614E21FDA8C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001657 Genomic DNA. Translation: ACT13179.1.
RefSeqiWP_015840369.1. NC_012917.1.

Genome annotation databases

EnsemblBacteriaiACT13179; ACT13179; PC1_2140.
KEGGipct:PC1_2140.
PATRICi20488922. VBIPecCar70489_2147.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001657 Genomic DNA. Translation: ACT13179.1.
RefSeqiWP_015840369.1. NC_012917.1.

3D structure databases

ProteinModelPortaliC6DI06.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi561230.PC1_2140.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACT13179; ACT13179; PC1_2140.
KEGGipct:PC1_2140.
PATRICi20488922. VBIPecCar70489_2147.

Phylogenomic databases

eggNOGiCOG2723.
HOGENOMiHOG000088631.
KOiK01223.
OMAiARYARTC.
OrthoDBiEOG6F81PM.

Enzyme and pathway databases

BioCyciPCAR561230:GKCK-2185-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR001360. Glyco_hydro_1.
IPR018120. Glyco_hydro_1_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10353. PTHR10353. 1 hit.
PfamiPF00232. Glyco_hydro_1. 1 hit.
[Graphical view]
PRINTSiPR00131. GLHYDRLASE1.
SUPFAMiSSF51445. SSF51445. 1 hit.
PROSITEiPS00572. GLYCOSYL_HYDROL_F1_1. 1 hit.
PS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Pectobacterium carotovorum subsp. carotovorum PC1."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
    , Balakrishnan V., Glasner J., Perna N.T.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PC1Imported.

Entry informationi

Entry nameiC6DI06_PECCP
AccessioniPrimary (citable) accession number: C6DI06
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: July 22, 2015
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.