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C6DGI8 (C6DGI8_PECCP) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length480 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 1 family. RuleBase RU003690

Ontologies

Keywords
   Molecular functionGlycosidase RuleBase RU004468
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C6DGI8 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: B42E8FE09AFA514F

FASTA48055,131
        10         20         30         40         50         60 
MSVQQLPKDF LWGGAVAAHQ VEGGWDQGGK GVSICDVLSG GAHGVDRVIT DGVQPGVSYP 

        70         80         90        100        110        120 
NHQAVEFYSH YKQDVALFAE MGFKCFRTSI AWTRIFPNGD ELEPNEAGLQ FYDDLFDELL 

       130        140        150        160        170        180 
KYNIEPVITL SHFEMPHHLV KQYGGWLNRK VVDFFVRYSE VVMKRYQSKV KYWMTFNEIN 

       190        200        210        220        230        240 
NQRNWQYPLF GYCCSGVIFT DHDKPEQAMY QTLHHQFVAS AKVVKLGHEI NPNFKIGCML 

       250        260        270        280        290        300 
ALVPIYPWSC HPDDVMFAQE AMRERHLFGD VQLRGYYPSY ILKEWARKGY QIDMQPEDEQ 

       310        320        330        340        350        360 
TLRDGCTDYL GFSYYMSSAV QLAAKGQKKE DSITGFDGGV KNPHVKASEW GWQIDPVGLR 

       370        380        390        400        410        420 
YTLNSFYERY QKPMFIVENG FGAVDKVEAD GSINDDYRIE YLKAHIDQMK KAVVEDGVEL 

       430        440        450        460        470        480 
MGYTPWGCID CVSFTTGQYS KRYGFIYVDK HDDGTGTFKR SKKKSFDWYK KVISSNGAEL 

« Hide

References

[1]"Complete sequence of Pectobacterium carotovorum subsp. carotovorum PC1."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. expand/collapse author list , Balakrishnan V., Glasner J., Perna N.T.
Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PC1 EMBL ACT11075.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001657 Genomic DNA. Translation: ACT11075.1.
RefSeqYP_003015611.1. NC_012917.1.

3D structure databases

ProteinModelPortalC6DGI8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING561230.PC1_0012.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT11075; ACT11075; PC1_0012.
GeneID8130912.
KEGGpct:PC1_0012.
PATRIC20484570. VBIPecCar70489_0012.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2723.
HOGENOMHOG000088631.
KOK01223.
OMAREGCADY.
OrthoDBEOG6F81PM.

Enzyme and pathway databases

BioCycPCAR561230:GKCK-12-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR001360. Glyco_hydro_1.
IPR018120. Glyco_hydro_1_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10353. PTHR10353. 1 hit.
PfamPF00232. Glyco_hydro_1. 1 hit.
[Graphical view]
PRINTSPR00131. GLHYDRLASE1.
SUPFAMSSF51445. SSF51445. 1 hit.
PROSITEPS00572. GLYCOSYL_HYDROL_F1_1. 1 hit.
PS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6DGI8_PECCP
AccessionPrimary (citable) accession number: C6DGI8
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)