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Protein
Submitted name:

Glycoside hydrolase family 1

Gene

PC1_0012

Organism
Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Enzyme and pathway databases

BioCyciPCAR561230:GKCK-12-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Glycoside hydrolase family 1Imported
Gene namesi
Ordered Locus Names:PC1_0012Imported
OrganismiPectobacterium carotovorum subsp. carotovorum (strain PC1)Imported
Taxonomic identifieri561230 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
ProteomesiUP000002736: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi561230.PC1_0012.

Structurei

3D structure databases

ProteinModelPortaliC6DGI8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 1 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG2723.
HOGENOMiHOG000088631.
KOiK01223.
OMAiFIHVNKN.
OrthoDBiEOG6F81PM.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR001360. Glyco_hydro_1.
IPR018120. Glyco_hydro_1_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10353. PTHR10353. 1 hit.
PfamiPF00232. Glyco_hydro_1. 1 hit.
[Graphical view]
PRINTSiPR00131. GLHYDRLASE1.
SUPFAMiSSF51445. SSF51445. 1 hit.
PROSITEiPS00572. GLYCOSYL_HYDROL_F1_1. 1 hit.
PS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6DGI8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSVQQLPKDF LWGGAVAAHQ VEGGWDQGGK GVSICDVLSG GAHGVDRVIT
60 70 80 90 100
DGVQPGVSYP NHQAVEFYSH YKQDVALFAE MGFKCFRTSI AWTRIFPNGD
110 120 130 140 150
ELEPNEAGLQ FYDDLFDELL KYNIEPVITL SHFEMPHHLV KQYGGWLNRK
160 170 180 190 200
VVDFFVRYSE VVMKRYQSKV KYWMTFNEIN NQRNWQYPLF GYCCSGVIFT
210 220 230 240 250
DHDKPEQAMY QTLHHQFVAS AKVVKLGHEI NPNFKIGCML ALVPIYPWSC
260 270 280 290 300
HPDDVMFAQE AMRERHLFGD VQLRGYYPSY ILKEWARKGY QIDMQPEDEQ
310 320 330 340 350
TLRDGCTDYL GFSYYMSSAV QLAAKGQKKE DSITGFDGGV KNPHVKASEW
360 370 380 390 400
GWQIDPVGLR YTLNSFYERY QKPMFIVENG FGAVDKVEAD GSINDDYRIE
410 420 430 440 450
YLKAHIDQMK KAVVEDGVEL MGYTPWGCID CVSFTTGQYS KRYGFIYVDK
460 470 480
HDDGTGTFKR SKKKSFDWYK KVISSNGAEL
Length:480
Mass (Da):55,131
Last modified:September 1, 2009 - v1
Checksum:iB42E8FE09AFA514F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001657 Genomic DNA. Translation: ACT11075.1.
RefSeqiWP_012772758.1. NC_012917.1.
YP_003015611.1. NC_012917.1.

Genome annotation databases

EnsemblBacteriaiACT11075; ACT11075; PC1_0012.
GeneIDi8130912.
KEGGipct:PC1_0012.
PATRICi20484570. VBIPecCar70489_0012.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001657 Genomic DNA. Translation: ACT11075.1.
RefSeqiWP_012772758.1. NC_012917.1.
YP_003015611.1. NC_012917.1.

3D structure databases

ProteinModelPortaliC6DGI8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi561230.PC1_0012.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACT11075; ACT11075; PC1_0012.
GeneIDi8130912.
KEGGipct:PC1_0012.
PATRICi20484570. VBIPecCar70489_0012.

Phylogenomic databases

eggNOGiCOG2723.
HOGENOMiHOG000088631.
KOiK01223.
OMAiFIHVNKN.
OrthoDBiEOG6F81PM.

Enzyme and pathway databases

BioCyciPCAR561230:GKCK-12-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR001360. Glyco_hydro_1.
IPR018120. Glyco_hydro_1_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10353. PTHR10353. 1 hit.
PfamiPF00232. Glyco_hydro_1. 1 hit.
[Graphical view]
PRINTSiPR00131. GLHYDRLASE1.
SUPFAMiSSF51445. SSF51445. 1 hit.
PROSITEiPS00572. GLYCOSYL_HYDROL_F1_1. 1 hit.
PS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Pectobacterium carotovorum subsp. carotovorum PC1."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
    , Balakrishnan V., Glasner J., Perna N.T.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PC1Imported.

Entry informationi

Entry nameiC6DGI8_PECCP
AccessioniPrimary (citable) accession number: C6DGI8
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: January 7, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.