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C6DGB1

- C6DGB1_PECCP

UniProt

C6DGB1 - C6DGB1_PECCP

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Protein
Submitted name:

Pectate lyase/Amb allergen

Gene
PC1_3859
Organism
Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. lyase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciPCAR561230:GKCK-3947-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pectate lyase/Amb allergenImported
Gene namesi
Ordered Locus Names:PC1_3859Imported
OrganismiPectobacterium carotovorum subsp. carotovorum (strain PC1)Imported
Taxonomic identifieri561230 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
ProteomesiUP000002736: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323 PredictedImportedAdd
BLAST
Chaini24 – 374351 PredictedImportedPRO_5000486166Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi561230.PC1_3859.

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG3866.
HOGENOMiHOG000039225.
KOiK01728.
OMAiGLVHAYN.
OrthoDBiEOG696BTP.

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
SMARTiSM00656. Amb_all. 1 hit.
SM00710. PbH1. 5 hits.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

C6DGB1-1 [UniParc]FASTAAdd to Basket

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MKYLLPTAAA GLLLFAAQPA MAANTGGYAT TDGGEVSGAV KKTARSMQEI    50
VDIIEAAKVD SKGKKVKGGA YPLIITYNGN EDSLIKAAEK NICGQWSKDA 100
RGVQVKEFTK GITIQGTNGS SANFGIWIIN SSDVVVRNMR FGYMPGGAQD 150
GDAIRIDNSP NVWIDHNEIF AKNFECKGTP DNDTTFESAV DIKKGSTNVT 200
VSYNYIHGIK KVGLSGSSNT DTGRNLTYHH NIYRDVNSRL PLQRGGLVHA 250
YNNLYDGITG SGFNVRQKGI ALIESNWFEN ALNPVTARND SSNFGTWELR 300
NNNITKPADF SKYNITWGRP SSPHVNADDW KSTGKFPSIS YKYTPVSAQC 350
VKDKLANYAG VGKNLAVLTA ANCK 374
Length:374
Mass (Da):40,514
Last modified:September 1, 2009 - v1
Checksum:i03F0252478C70AE5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001657 Genomic DNA. Translation: ACT14874.1.
RefSeqiWP_015841958.1. NC_012917.1.
YP_003019410.1. NC_012917.1.

Genome annotation databases

EnsemblBacteriaiACT14874; ACT14874; PC1_3859.
GeneIDi8134846.
KEGGipct:PC1_3859.
PATRICi20492484. VBIPecCar70489_3885.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001657 Genomic DNA. Translation: ACT14874.1 .
RefSeqi WP_015841958.1. NC_012917.1.
YP_003019410.1. NC_012917.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 561230.PC1_3859.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACT14874 ; ACT14874 ; PC1_3859 .
GeneIDi 8134846.
KEGGi pct:PC1_3859.
PATRICi 20492484. VBIPecCar70489_3885.

Phylogenomic databases

eggNOGi COG3866.
HOGENOMi HOG000039225.
KOi K01728.
OMAi GLVHAYN.
OrthoDBi EOG696BTP.

Enzyme and pathway databases

BioCyci PCAR561230:GKCK-3947-MONOMER.

Family and domain databases

Gene3Di 2.160.20.10. 1 hit.
InterProi IPR002022. Amb_allergen_dom.
IPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view ]
Pfami PF00544. Pec_lyase_C. 1 hit.
[Graphical view ]
SMARTi SM00656. Amb_all. 1 hit.
SM00710. PbH1. 5 hits.
[Graphical view ]
SUPFAMi SSF51126. SSF51126. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Pectobacterium carotovorum subsp. carotovorum PC1."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
    , Balakrishnan V., Glasner J., Perna N.T.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PC1Imported.

Entry informationi

Entry nameiC6DGB1_PECCP
AccessioniPrimary (citable) accession number: C6DGB1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: September 3, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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