C6DGB1 (C6DGB1_PECCP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Pectate lyase/Amb allergen EMBL ACT14874.1

Gene names

Ordered Locus Names:

PC1_3859

Organism

Pectobacterium carotovorum subsp. carotovorum (strain PC1) [Complete proteome] [HAMAP] EMBL ACT14874.1

Taxonomic identifier

561230 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Pectobacterium › Erwinia carotovora › Pectobacterium carotovorum subsp. carotovorum

Protein attributes

Sequence length	374 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ACT14874.1
Molecular function	Lyase EMBL ACT14874.1
Technical term	Complete proteome
Gene Ontology (GO)
Molecular_function	lyase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 23	23	Potential EMBL ACT14874.1
	Chain	24 – 374	351	Potential EMBL ACT14874.1		PRO_5000486166

Sequences

	Sequence		Length	Mass (Da)
	C6DGB1 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 03F0252478C70AE5	FASTA	374	40,514
	10 20 30 40 50 60 MKYLLPTAAA GLLLFAAQPA MAANTGGYAT TDGGEVSGAV KKTARSMQEI VDIIEAAKVD 70 80 90 100 110 120 SKGKKVKGGA YPLIITYNGN EDSLIKAAEK NICGQWSKDA RGVQVKEFTK GITIQGTNGS 130 140 150 160 170 180 SANFGIWIIN SSDVVVRNMR FGYMPGGAQD GDAIRIDNSP NVWIDHNEIF AKNFECKGTP 190 200 210 220 230 240 DNDTTFESAV DIKKGSTNVT VSYNYIHGIK KVGLSGSSNT DTGRNLTYHH NIYRDVNSRL 250 260 270 280 290 300 PLQRGGLVHA YNNLYDGITG SGFNVRQKGI ALIESNWFEN ALNPVTARND SSNFGTWELR 310 320 330 340 350 360 NNNITKPADF SKYNITWGRP SSPHVNADDW KSTGKFPSIS YKYTPVSAQC VKDKLANYAG 370 VGKNLAVLTA ANCK

References

[1]

"Complete sequence of Pectobacterium carotovorum subsp. carotovorum PC1." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. , Balakrishnan V., Glasner J., Perna N.T. Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PC1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001657 Genomic DNA. Translation: ACT14874.1.
RefSeq	YP_003019410.1. NC_012917.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	561230.PC1_3859.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACT14874; ACT14874; PC1_3859.
GeneID	8134846.
KEGG	pct:PC1_3859.
PATRIC	20492484. VBIPecCar70489_3885.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3866.
HOGENOM	HOG000039225.
KO	K01728.
OMA	GLVHAYN.
ProtClustDB	CLSK2307645.
Enzyme and pathway databases
BioCyc	PCAR561230:GKCK-3947-MONOMER.
Family and domain databases
Gene3D	2.160.20.10. 1 hit.
InterPro	IPR002022. Amb_allergen_dom. IPR006626. PbH1. IPR012334. Pectin_lyas_fold. IPR011050. Pectin_lyase_fold/virulence. [Graphical view]
Pfam	PF00544. Pec_lyase_C. 1 hit. [Graphical view]
SMART	SM00656. Amb_all. 1 hit. SM00710. PbH1. 5 hits. [Graphical view]
SUPFAM	SSF51126. Pectin_lyas_like. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C6DGB1_PECCP

Accession

Primary (citable) accession number: C6DGB1

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	May 29, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)