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Protein
Submitted name:

Pectate lyase/Amb allergen

Gene

PC1_3859

Organism
Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradationUniRule annotation

Enzyme and pathway databases

BioCyciPCAR561230:GKCK-3947-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pectate lyase/Amb allergenImported
Gene namesi
Ordered Locus Names:PC1_3859Imported
OrganismiPectobacterium carotovorum subsp. carotovorum (strain PC1)Imported
Taxonomic identifieri561230 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
ProteomesiUP000002736 Componenti: Chromosome

Subcellular locationi

  • Secreted UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

SecretedUniRule annotation

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323 PotentialImportedAdd
BLAST
Chaini24 – 374351 PotentialImportedPRO_5000486166Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi561230.PC1_3859.

Family & Domainsi

Sequence similaritiesi

Belongs to the polysaccharide lyase 1 family.UniRule annotation

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG3866.
HOGENOMiHOG000039225.
KOiK01728.
OMAiWIKKSSD.
OrthoDBiEOG696BTP.

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
SMARTiSM00656. Amb_all. 1 hit.
SM00710. PbH1. 5 hits.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

C6DGB1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKYLLPTAAA GLLLFAAQPA MAANTGGYAT TDGGEVSGAV KKTARSMQEI
60 70 80 90 100
VDIIEAAKVD SKGKKVKGGA YPLIITYNGN EDSLIKAAEK NICGQWSKDA
110 120 130 140 150
RGVQVKEFTK GITIQGTNGS SANFGIWIIN SSDVVVRNMR FGYMPGGAQD
160 170 180 190 200
GDAIRIDNSP NVWIDHNEIF AKNFECKGTP DNDTTFESAV DIKKGSTNVT
210 220 230 240 250
VSYNYIHGIK KVGLSGSSNT DTGRNLTYHH NIYRDVNSRL PLQRGGLVHA
260 270 280 290 300
YNNLYDGITG SGFNVRQKGI ALIESNWFEN ALNPVTARND SSNFGTWELR
310 320 330 340 350
NNNITKPADF SKYNITWGRP SSPHVNADDW KSTGKFPSIS YKYTPVSAQC
360 370
VKDKLANYAG VGKNLAVLTA ANCK
Length:374
Mass (Da):40,514
Last modified:September 1, 2009 - v1
Checksum:i03F0252478C70AE5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001657 Genomic DNA. Translation: ACT14874.1.
RefSeqiWP_015841958.1. NC_012917.1.

Genome annotation databases

EnsemblBacteriaiACT14874; ACT14874; PC1_3859.
KEGGipct:PC1_3859.
PATRICi20492484. VBIPecCar70489_3885.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001657 Genomic DNA. Translation: ACT14874.1.
RefSeqiWP_015841958.1. NC_012917.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi561230.PC1_3859.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACT14874; ACT14874; PC1_3859.
KEGGipct:PC1_3859.
PATRICi20492484. VBIPecCar70489_3885.

Phylogenomic databases

eggNOGiCOG3866.
HOGENOMiHOG000039225.
KOiK01728.
OMAiWIKKSSD.
OrthoDBiEOG696BTP.

Enzyme and pathway databases

BioCyciPCAR561230:GKCK-3947-MONOMER.

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
SMARTiSM00656. Amb_all. 1 hit.
SM00710. PbH1. 5 hits.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Pectobacterium carotovorum subsp. carotovorum PC1."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
    , Balakrishnan V., Glasner J., Perna N.T.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PC1Imported.

Entry informationi

Entry nameiC6DGB1_PECCP
AccessioniPrimary (citable) accession number: C6DGB1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: July 22, 2015
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.