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C6DGB1

- C6DGB1_PECCP

UniProt

C6DGB1 - C6DGB1_PECCP

Protein
Submitted name:

Pectate lyase/Amb allergen

Gene

PC1_3859

Organism
Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 30 (01 Oct 2014)
      Sequence version 1 (01 Sep 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. lyase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    LyaseUniRule annotationImported

    Keywords - Biological processi

    Carbohydrate metabolism, Polysaccharide degradationUniRule annotation

    Enzyme and pathway databases

    BioCyciPCAR561230:GKCK-3947-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Pectate lyase/Amb allergenImported
    Gene namesi
    Ordered Locus Names:PC1_3859Imported
    OrganismiPectobacterium carotovorum subsp. carotovorum (strain PC1)Imported
    Taxonomic identifieri561230 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
    ProteomesiUP000002736: Chromosome

    Subcellular locationi

    Secreted UniRule annotation

    Keywords - Cellular componenti

    SecretedUniRule annotation

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2323 PotentialImportedAdd
    BLAST
    Chaini24 – 374351 PotentialImportedPRO_5000486166Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi561230.PC1_3859.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the polysaccharide lyase 1 family.UniRule annotation

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    eggNOGiCOG3866.
    HOGENOMiHOG000039225.
    KOiK01728.
    OMAiGLVHAYN.
    OrthoDBiEOG696BTP.

    Family and domain databases

    Gene3Di2.160.20.10. 1 hit.
    InterProiIPR002022. Amb_allergen_dom.
    IPR006626. PbH1.
    IPR012334. Pectin_lyas_fold.
    IPR011050. Pectin_lyase_fold/virulence.
    [Graphical view]
    PfamiPF00544. Pec_lyase_C. 1 hit.
    [Graphical view]
    SMARTiSM00656. Amb_all. 1 hit.
    SM00710. PbH1. 5 hits.
    [Graphical view]
    SUPFAMiSSF51126. SSF51126. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    C6DGB1-1 [UniParc]FASTAAdd to Basket

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    MKYLLPTAAA GLLLFAAQPA MAANTGGYAT TDGGEVSGAV KKTARSMQEI    50
    VDIIEAAKVD SKGKKVKGGA YPLIITYNGN EDSLIKAAEK NICGQWSKDA 100
    RGVQVKEFTK GITIQGTNGS SANFGIWIIN SSDVVVRNMR FGYMPGGAQD 150
    GDAIRIDNSP NVWIDHNEIF AKNFECKGTP DNDTTFESAV DIKKGSTNVT 200
    VSYNYIHGIK KVGLSGSSNT DTGRNLTYHH NIYRDVNSRL PLQRGGLVHA 250
    YNNLYDGITG SGFNVRQKGI ALIESNWFEN ALNPVTARND SSNFGTWELR 300
    NNNITKPADF SKYNITWGRP SSPHVNADDW KSTGKFPSIS YKYTPVSAQC 350
    VKDKLANYAG VGKNLAVLTA ANCK 374
    Length:374
    Mass (Da):40,514
    Last modified:September 1, 2009 - v1
    Checksum:i03F0252478C70AE5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001657 Genomic DNA. Translation: ACT14874.1.
    RefSeqiWP_015841958.1. NC_012917.1.
    YP_003019410.1. NC_012917.1.

    Genome annotation databases

    EnsemblBacteriaiACT14874; ACT14874; PC1_3859.
    GeneIDi8134846.
    KEGGipct:PC1_3859.
    PATRICi20492484. VBIPecCar70489_3885.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001657 Genomic DNA. Translation: ACT14874.1 .
    RefSeqi WP_015841958.1. NC_012917.1.
    YP_003019410.1. NC_012917.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 561230.PC1_3859.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACT14874 ; ACT14874 ; PC1_3859 .
    GeneIDi 8134846.
    KEGGi pct:PC1_3859.
    PATRICi 20492484. VBIPecCar70489_3885.

    Phylogenomic databases

    eggNOGi COG3866.
    HOGENOMi HOG000039225.
    KOi K01728.
    OMAi GLVHAYN.
    OrthoDBi EOG696BTP.

    Enzyme and pathway databases

    BioCyci PCAR561230:GKCK-3947-MONOMER.

    Family and domain databases

    Gene3Di 2.160.20.10. 1 hit.
    InterProi IPR002022. Amb_allergen_dom.
    IPR006626. PbH1.
    IPR012334. Pectin_lyas_fold.
    IPR011050. Pectin_lyase_fold/virulence.
    [Graphical view ]
    Pfami PF00544. Pec_lyase_C. 1 hit.
    [Graphical view ]
    SMARTi SM00656. Amb_all. 1 hit.
    SM00710. PbH1. 5 hits.
    [Graphical view ]
    SUPFAMi SSF51126. SSF51126. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Pectobacterium carotovorum subsp. carotovorum PC1."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
      , Balakrishnan V., Glasner J., Perna N.T.
      Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PC1Imported.

    Entry informationi

    Entry nameiC6DGB1_PECCP
    AccessioniPrimary (citable) accession number: C6DGB1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 1, 2009
    Last sequence update: September 1, 2009
    Last modified: October 1, 2014
    This is version 30 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3