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C6DGB1 (C6DGB1_PECCP) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length374 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ACT14874.1
   Molecular functionLyase EMBL ACT14874.1
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functionlyase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2323 Potential EMBL ACT14874.1
Chain24 – 374351 Potential EMBL ACT14874.1
PRO_5000486166

Sequences

Sequence LengthMass (Da)Tools
C6DGB1 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 03F0252478C70AE5

FASTA37440,514
        10         20         30         40         50         60 
MKYLLPTAAA GLLLFAAQPA MAANTGGYAT TDGGEVSGAV KKTARSMQEI VDIIEAAKVD 

        70         80         90        100        110        120 
SKGKKVKGGA YPLIITYNGN EDSLIKAAEK NICGQWSKDA RGVQVKEFTK GITIQGTNGS 

       130        140        150        160        170        180 
SANFGIWIIN SSDVVVRNMR FGYMPGGAQD GDAIRIDNSP NVWIDHNEIF AKNFECKGTP 

       190        200        210        220        230        240 
DNDTTFESAV DIKKGSTNVT VSYNYIHGIK KVGLSGSSNT DTGRNLTYHH NIYRDVNSRL 

       250        260        270        280        290        300 
PLQRGGLVHA YNNLYDGITG SGFNVRQKGI ALIESNWFEN ALNPVTARND SSNFGTWELR 

       310        320        330        340        350        360 
NNNITKPADF SKYNITWGRP SSPHVNADDW KSTGKFPSIS YKYTPVSAQC VKDKLANYAG 

       370 
VGKNLAVLTA ANCK 

« Hide

References

[1]"Complete sequence of Pectobacterium carotovorum subsp. carotovorum PC1."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. expand/collapse author list , Balakrishnan V., Glasner J., Perna N.T.
Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PC1 EMBL ACT14874.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001657 Genomic DNA. Translation: ACT14874.1.
RefSeqYP_003019410.1. NC_012917.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING561230.PC1_3859.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT14874; ACT14874; PC1_3859.
GeneID8134846.
KEGGpct:PC1_3859.
PATRIC20492484. VBIPecCar70489_3885.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3866.
HOGENOMHOG000039225.
KOK01728.
OMAGLVHAYN.
OrthoDBEOG696BTP.

Enzyme and pathway databases

BioCycPCAR561230:GKCK-3947-MONOMER.

Family and domain databases

Gene3D2.160.20.10. 1 hit.
InterProIPR002022. Amb_allergen_dom.
IPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
SMARTSM00656. Amb_all. 1 hit.
SM00710. PbH1. 5 hits.
[Graphical view]
SUPFAMSSF51126. SSF51126. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC6DGB1_PECCP
AccessionPrimary (citable) accession number: C6DGB1
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)