Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

C6DE25

- C6DE25_PECCP

UniProt

C6DE25 - C6DE25_PECCP

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Ribonuclease R

Gene

rnr

Organism
Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.UniRule annotation

Catalytic activityi

Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotationSAAS annotation

GO - Molecular functioni

  1. exoribonuclease II activity Source: UniProtKB-HAMAP
  2. RNA binding Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

ExonucleaseUniRule annotationSAAS annotation, Hydrolase, Nuclease

Keywords - Ligandi

RNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciPCAR561230:GKCK-3526-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease RUniRule annotation (EC:3.1.13.1UniRule annotation)
Short name:
RNase RUniRule annotation
Gene namesi
Name:rnrUniRule annotation
Ordered Locus Names:PC1_3445Imported
OrganismiPectobacterium carotovorum subsp. carotovorum (strain PC1)Imported
Taxonomic identifieri561230 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
ProteomesiUP000002736: Chromosome

Subcellular locationi

Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi561230.PC1_3445.

Structurei

3D structure databases

ProteinModelPortaliC6DE25.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini641 – 72282S1 motifUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RNR ribonuclease family. RNase R subfamily.UniRule annotation
Contains 1 S1 motif domain.UniRule annotation
Contains S1 motif domain.SAAS annotation
Contains Smotif domain.SAAS annotation

Phylogenomic databases

eggNOGiCOG0557.
HOGENOMiHOG000071120.
KOiK12573.
OMAiGFFVRLN.
OrthoDBiEOG6Q5NRD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_01895. RNase_R.
InterProiIPR011129. Cold_shock_prot.
IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR013223. RNase_B_OB_dom.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
IPR013668. RNase_R_HTH_12.
IPR022967. S1_dom.
[Graphical view]
PfamiPF08461. HTH_12. 1 hit.
PF08206. OB_RNB. 2 hits.
PF00575. S1. 1 hit.
[Graphical view]
SMARTiSM00357. CSP. 1 hit.
SM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 4 hits.
TIGRFAMsiTIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEiPS50126. S1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6DE25-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSQDPFLERE AEKYESPIPS REYILAHIAK RDTPISREEL AADLQLTGEE
60 70 80 90 100
PLEALRRRLR AMERDGQLIF TRRQCYALPE KLDLLRGTVI GHRDGFGFLR
110 120 130 140 150
VEGRKDDLYL SAEEMKRAIH GDVVLAQPLG ADRKGRREGR IVRVLEPRTG
160 170 180 190 200
QIVGRYFVDA GVGFVVPDDS RLSFDILIPK EEINGARMGF VVVVELTQRA
210 220 230 240 250
TRRTKAVGKI VEILGDNMGT GLAVDIALRT HDIPHTWPPK VEEQVKDLAE
260 270 280 290 300
EVPEAAKKGR VDLRKLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA
310 320 330 340 350
DVSYYVRPNT PLDHEARARG TSVYFPSQVV PMLPEVLSNG LCSLNPQVDR
360 370 380 390 400
LCMVCEMTVS AQGKLSSYKF YEAVMSSHAR LTYTKVWNIL QGDAELREHY
410 420 430 440 450
KPLVGGLEEL HHMYKVLEHA REVRGGIAFE TEEAKFIFNA ERRIDRVEAV
460 470 480 490 500
VRNDAHKLIE ECMILANISA AKFVEKNEEP ALFRVHDQPS EDHVLALRSV
510 520 530 540 550
LGELGLTLKG GMKPQPKDYA ELMNEVADRP DREMLQTMLL RSMKQAIYDP
560 570 580 590 600
ENRGHFGLAL TSYGHFTSPI RRYPDLSLHR AIKYLLSNRH ERWTPTGGWH
610 620 630 640 650
SDINEMLQLG MHCSMTERRA DEATRDVADW LKCDFMQDHV GEVFTGIISS
660 670 680 690 700
VTGFGFFVRL KDLFIDGLVH VSTLDNDYYR YDNIGQRLIG ESRGQVYRLG
710 720 730 740 750
DEVEIRVEAV HMDERNIDFA LISSTRKVRG EGKTARDRAK KPDSREAKPA
760 770 780 790 800
RRRRSASKAP ANFEPDAAFR KEGDRNAKSD KPKAKPKKNR DKAKKNAEKT
810
RKIAAATKAK RAKKKSAE
Length:818
Mass (Da):92,930
Last modified:September 1, 2009 - v1
Checksum:iA2A653F19EA32096
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001657 Genomic DNA. Translation: ACT14461.1.
RefSeqiYP_003018997.1. NC_012917.1.

Genome annotation databases

EnsemblBacteriaiACT14461; ACT14461; PC1_3445.
GeneIDi8134425.
KEGGipct:PC1_3445.
PATRICi20491624. VBIPecCar70489_3462.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001657 Genomic DNA. Translation: ACT14461.1 .
RefSeqi YP_003018997.1. NC_012917.1.

3D structure databases

ProteinModelPortali C6DE25.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 561230.PC1_3445.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACT14461 ; ACT14461 ; PC1_3445 .
GeneIDi 8134425.
KEGGi pct:PC1_3445.
PATRICi 20491624. VBIPecCar70489_3462.

Phylogenomic databases

eggNOGi COG0557.
HOGENOMi HOG000071120.
KOi K12573.
OMAi GFFVRLN.
OrthoDBi EOG6Q5NRD.

Enzyme and pathway databases

BioCyci PCAR561230:GKCK-3526-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
HAMAPi MF_01895. RNase_R.
InterProi IPR011129. Cold_shock_prot.
IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR013223. RNase_B_OB_dom.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
IPR013668. RNase_R_HTH_12.
IPR022967. S1_dom.
[Graphical view ]
Pfami PF08461. HTH_12. 1 hit.
PF08206. OB_RNB. 2 hits.
PF00575. S1. 1 hit.
[Graphical view ]
SMARTi SM00357. CSP. 1 hit.
SM00316. S1. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 4 hits.
TIGRFAMsi TIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEi PS50126. S1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Pectobacterium carotovorum subsp. carotovorum PC1."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
    , Balakrishnan V., Glasner J., Perna N.T.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PC1Imported.

Entry informationi

Entry nameiC6DE25_PECCP
AccessioniPrimary (citable) accession number: C6DE25
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: October 29, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3