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C6DE25

- C6DE25_PECCP

UniProt

C6DE25 - C6DE25_PECCP

Protein

Ribonuclease R

Gene

rnr

Organism
Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (01 Sep 2009)
      Previous versions | rss
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    Functioni

    3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.UniRule annotation

    Catalytic activityi

    Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotationSAAS annotation

    GO - Molecular functioni

    1. exoribonuclease II activity Source: UniProtKB-HAMAP
    2. RNA binding Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    ExonucleaseUniRule annotationSAAS annotation, Hydrolase, Nuclease

    Keywords - Ligandi

    RNA-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciPCAR561230:GKCK-3526-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribonuclease RUniRule annotation (EC:3.1.13.1UniRule annotation)
    Short name:
    RNase RUniRule annotation
    Gene namesi
    Name:rnrUniRule annotation
    Ordered Locus Names:PC1_3445Imported
    OrganismiPectobacterium carotovorum subsp. carotovorum (strain PC1)Imported
    Taxonomic identifieri561230 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
    ProteomesiUP000002736: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    STRINGi561230.PC1_3445.

    Structurei

    3D structure databases

    ProteinModelPortaliC6DE25.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini641 – 72282S1 motifUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the RNR ribonuclease family. RNase R subfamily.UniRule annotation
    Contains 1 S1 motif domain.UniRule annotation
    Contains S1 motif domain.SAAS annotation
    Contains Smotif domain.SAAS annotation

    Phylogenomic databases

    eggNOGiCOG0557.
    HOGENOMiHOG000071120.
    KOiK12573.
    OMAiGFFVRLN.
    OrthoDBiEOG6Q5NRD.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    HAMAPiMF_01895. RNase_R.
    InterProiIPR011129. Cold_shock_prot.
    IPR012340. NA-bd_OB-fold.
    IPR003029. Rbsml_prot_S1_RNA-bd_dom.
    IPR022967. RNA-binding_domain_S1.
    IPR013223. RNase_B_OB_dom.
    IPR004476. RNase_II/RNase_R.
    IPR011805. RNase_R.
    IPR013668. RNase_R_HTH_12.
    [Graphical view]
    PfamiPF08461. HTH_12. 1 hit.
    PF08206. OB_RNB. 2 hits.
    PF00575. S1. 1 hit.
    [Graphical view]
    SMARTiSM00357. CSP. 1 hit.
    SM00316. S1. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 4 hits.
    TIGRFAMsiTIGR00358. 3_prime_RNase. 1 hit.
    TIGR02063. RNase_R. 1 hit.
    PROSITEiPS50126. S1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C6DE25-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSQDPFLERE AEKYESPIPS REYILAHIAK RDTPISREEL AADLQLTGEE    50
    PLEALRRRLR AMERDGQLIF TRRQCYALPE KLDLLRGTVI GHRDGFGFLR 100
    VEGRKDDLYL SAEEMKRAIH GDVVLAQPLG ADRKGRREGR IVRVLEPRTG 150
    QIVGRYFVDA GVGFVVPDDS RLSFDILIPK EEINGARMGF VVVVELTQRA 200
    TRRTKAVGKI VEILGDNMGT GLAVDIALRT HDIPHTWPPK VEEQVKDLAE 250
    EVPEAAKKGR VDLRKLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA 300
    DVSYYVRPNT PLDHEARARG TSVYFPSQVV PMLPEVLSNG LCSLNPQVDR 350
    LCMVCEMTVS AQGKLSSYKF YEAVMSSHAR LTYTKVWNIL QGDAELREHY 400
    KPLVGGLEEL HHMYKVLEHA REVRGGIAFE TEEAKFIFNA ERRIDRVEAV 450
    VRNDAHKLIE ECMILANISA AKFVEKNEEP ALFRVHDQPS EDHVLALRSV 500
    LGELGLTLKG GMKPQPKDYA ELMNEVADRP DREMLQTMLL RSMKQAIYDP 550
    ENRGHFGLAL TSYGHFTSPI RRYPDLSLHR AIKYLLSNRH ERWTPTGGWH 600
    SDINEMLQLG MHCSMTERRA DEATRDVADW LKCDFMQDHV GEVFTGIISS 650
    VTGFGFFVRL KDLFIDGLVH VSTLDNDYYR YDNIGQRLIG ESRGQVYRLG 700
    DEVEIRVEAV HMDERNIDFA LISSTRKVRG EGKTARDRAK KPDSREAKPA 750
    RRRRSASKAP ANFEPDAAFR KEGDRNAKSD KPKAKPKKNR DKAKKNAEKT 800
    RKIAAATKAK RAKKKSAE 818
    Length:818
    Mass (Da):92,930
    Last modified:September 1, 2009 - v1
    Checksum:iA2A653F19EA32096
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001657 Genomic DNA. Translation: ACT14461.1.
    RefSeqiYP_003018997.1. NC_012917.1.

    Genome annotation databases

    EnsemblBacteriaiACT14461; ACT14461; PC1_3445.
    GeneIDi8134425.
    KEGGipct:PC1_3445.
    PATRICi20491624. VBIPecCar70489_3462.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001657 Genomic DNA. Translation: ACT14461.1 .
    RefSeqi YP_003018997.1. NC_012917.1.

    3D structure databases

    ProteinModelPortali C6DE25.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 561230.PC1_3445.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACT14461 ; ACT14461 ; PC1_3445 .
    GeneIDi 8134425.
    KEGGi pct:PC1_3445.
    PATRICi 20491624. VBIPecCar70489_3462.

    Phylogenomic databases

    eggNOGi COG0557.
    HOGENOMi HOG000071120.
    KOi K12573.
    OMAi GFFVRLN.
    OrthoDBi EOG6Q5NRD.

    Enzyme and pathway databases

    BioCyci PCAR561230:GKCK-3526-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    HAMAPi MF_01895. RNase_R.
    InterProi IPR011129. Cold_shock_prot.
    IPR012340. NA-bd_OB-fold.
    IPR003029. Rbsml_prot_S1_RNA-bd_dom.
    IPR022967. RNA-binding_domain_S1.
    IPR013223. RNase_B_OB_dom.
    IPR004476. RNase_II/RNase_R.
    IPR011805. RNase_R.
    IPR013668. RNase_R_HTH_12.
    [Graphical view ]
    Pfami PF08461. HTH_12. 1 hit.
    PF08206. OB_RNB. 2 hits.
    PF00575. S1. 1 hit.
    [Graphical view ]
    SMARTi SM00357. CSP. 1 hit.
    SM00316. S1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 4 hits.
    TIGRFAMsi TIGR00358. 3_prime_RNase. 1 hit.
    TIGR02063. RNase_R. 1 hit.
    PROSITEi PS50126. S1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Pectobacterium carotovorum subsp. carotovorum PC1."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
      , Balakrishnan V., Glasner J., Perna N.T.
      Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PC1Imported.

    Entry informationi

    Entry nameiC6DE25_PECCP
    AccessioniPrimary (citable) accession number: C6DE25
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 1, 2009
    Last sequence update: September 1, 2009
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3