UniProtKB - C6DE25 (C6DE25_PECCP)
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Protein
Ribonuclease R
Gene
rnr
Organism
Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Status
Functioni
3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.UniRule annotation
Catalytic activityi
Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotationSAAS annotation
GO - Molecular functioni
- exoribonuclease II activity Source: UniProtKB-UniRule
- RNA binding Source: UniProtKB-UniRule
Keywordsi
Molecular function | ExonucleaseUniRule annotationSAAS annotation, Hydrolase, Nuclease, RNA-bindingUniRule annotation |
Enzyme and pathway databases
BioCyci | PCAR561230:G1GF8-3514-MONOMER. |
Names & Taxonomyi
Protein namesi | Recommended name: Ribonuclease RUniRule annotation (EC:3.1.13.1UniRule annotation)Short name: RNase RUniRule annotation |
Gene namesi | Name:rnrUniRule annotation Ordered Locus Names:PC1_3445Imported |
Organismi | Pectobacterium carotovorum subsp. carotovorum (strain PC1)Imported |
Taxonomic identifieri | 561230 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Pectobacteriaceae › Pectobacterium › |
Proteomesi |
|
Subcellular locationi
- Cytoplasm UniRule annotationSAAS annotation
GO - Cellular componenti
- cytoplasm Source: UniProtKB-SubCell
Keywords - Cellular componenti
CytoplasmUniRule annotationSAAS annotationInteractioni
Subunit structurei
Monomer.UniRule annotation
Protein-protein interaction databases
STRINGi | 561230.PC1_3445. |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 641 – 722 | S1 motifInterPro annotationAdd BLAST | 82 |
Sequence similaritiesi
Phylogenomic databases
eggNOGi | ENOG4105C40. Bacteria. COG0557. LUCA. |
HOGENOMi | HOG000071120. |
KOi | K12573. |
OMAi | DWYEYRS. |
OrthoDBi | POG091H0219. |
Family and domain databases
HAMAPi | MF_01895. RNase_R. 1 hit. |
InterProi | View protein in InterPro IPR011129. CSD. IPR013223. RNase_B_OB_dom. IPR004476. RNase_II/RNase_R. IPR011805. RNase_R. IPR013668. RNase_R_HTH_12. IPR022967. S1_dom. IPR003029. S1_domain. |
Pfami | View protein in Pfam PF08461. HTH_12. 1 hit. PF08206. OB_RNB. 2 hits. PF00575. S1. 1 hit. |
SMARTi | View protein in SMART SM00357. CSP. 1 hit. SM00316. S1. 1 hit. |
TIGRFAMsi | TIGR00358. 3_prime_RNase. 1 hit. TIGR02063. RNase_R. 1 hit. |
PROSITEi | View protein in PROSITE PS50126. S1. 1 hit. |
i Sequence
Sequence statusi: Complete.
C6DE25-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MSQDPFLERE AEKYESPIPS REYILAHIAK RDTPISREEL AADLQLTGEE
60 70 80 90 100
PLEALRRRLR AMERDGQLIF TRRQCYALPE KLDLLRGTVI GHRDGFGFLR
110 120 130 140 150
VEGRKDDLYL SAEEMKRAIH GDVVLAQPLG ADRKGRREGR IVRVLEPRTG
160 170 180 190 200
QIVGRYFVDA GVGFVVPDDS RLSFDILIPK EEINGARMGF VVVVELTQRA
210 220 230 240 250
TRRTKAVGKI VEILGDNMGT GLAVDIALRT HDIPHTWPPK VEEQVKDLAE
260 270 280 290 300
EVPEAAKKGR VDLRKLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA
310 320 330 340 350
DVSYYVRPNT PLDHEARARG TSVYFPSQVV PMLPEVLSNG LCSLNPQVDR
360 370 380 390 400
LCMVCEMTVS AQGKLSSYKF YEAVMSSHAR LTYTKVWNIL QGDAELREHY
410 420 430 440 450
KPLVGGLEEL HHMYKVLEHA REVRGGIAFE TEEAKFIFNA ERRIDRVEAV
460 470 480 490 500
VRNDAHKLIE ECMILANISA AKFVEKNEEP ALFRVHDQPS EDHVLALRSV
510 520 530 540 550
LGELGLTLKG GMKPQPKDYA ELMNEVADRP DREMLQTMLL RSMKQAIYDP
560 570 580 590 600
ENRGHFGLAL TSYGHFTSPI RRYPDLSLHR AIKYLLSNRH ERWTPTGGWH
610 620 630 640 650
SDINEMLQLG MHCSMTERRA DEATRDVADW LKCDFMQDHV GEVFTGIISS
660 670 680 690 700
VTGFGFFVRL KDLFIDGLVH VSTLDNDYYR YDNIGQRLIG ESRGQVYRLG
710 720 730 740 750
DEVEIRVEAV HMDERNIDFA LISSTRKVRG EGKTARDRAK KPDSREAKPA
760 770 780 790 800
RRRRSASKAP ANFEPDAAFR KEGDRNAKSD KPKAKPKKNR DKAKKNAEKT
810
RKIAAATKAK RAKKKSAE
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CP001657 Genomic DNA. Translation: ACT14461.1. |
RefSeqi | WP_015841586.1. NC_012917.1. |
Genome annotation databases
EnsemblBacteriai | ACT14461; ACT14461; PC1_3445. |
GeneIDi | 29704354. |
KEGGi | pct:PC1_3445. |
Similar proteinsi
Entry informationi
Entry namei | C6DE25_PECCP | |
Accessioni | C6DE25Primary (citable) accession number: C6DE25 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | September 1, 2009 |
Last sequence update: | September 1, 2009 | |
Last modified: | February 28, 2018 | |
This is version 68 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |