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C6DE25 (C6DE25_PECCP) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length818 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs By similarity. HAMAP-Rule MF_01895

Catalytic activity

Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates. HAMAP-Rule MF_01895 SAAS SAAS004476

Subunit structure

Monomer By similarity. HAMAP-Rule MF_01895

Subcellular location

Cytoplasm By similarity SAAS SAAS004476 HAMAP-Rule MF_01895.

Sequence similarities

Belongs to the RNR ribonuclease family. RNase R subfamily. HAMAP-Rule MF_01895

Contains 1 S1 motif domain. HAMAP-Rule MF_01895

Contains S1 motif domain. SAAS SAAS013223

Contains Smotif domain. SAAS SAAS013223

Ontologies

Keywords
   Cellular componentCytoplasm SAAS SAAS004476 HAMAP-Rule MF_01895
   LigandRNA-binding SAAS SAAS004476 HAMAP-Rule MF_01895
   Molecular functionExonuclease HAMAP-Rule MF_01895 SAAS SAAS013223
Hydrolase
Nuclease
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

exoribonuclease II activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain641 – 72282S1 motif By similarity HAMAP-Rule MF_01895

Sequences

Sequence LengthMass (Da)Tools
C6DE25 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: A2A653F19EA32096

FASTA81892,930
        10         20         30         40         50         60 
MSQDPFLERE AEKYESPIPS REYILAHIAK RDTPISREEL AADLQLTGEE PLEALRRRLR 

        70         80         90        100        110        120 
AMERDGQLIF TRRQCYALPE KLDLLRGTVI GHRDGFGFLR VEGRKDDLYL SAEEMKRAIH 

       130        140        150        160        170        180 
GDVVLAQPLG ADRKGRREGR IVRVLEPRTG QIVGRYFVDA GVGFVVPDDS RLSFDILIPK 

       190        200        210        220        230        240 
EEINGARMGF VVVVELTQRA TRRTKAVGKI VEILGDNMGT GLAVDIALRT HDIPHTWPPK 

       250        260        270        280        290        300 
VEEQVKDLAE EVPEAAKKGR VDLRKLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA 

       310        320        330        340        350        360 
DVSYYVRPNT PLDHEARARG TSVYFPSQVV PMLPEVLSNG LCSLNPQVDR LCMVCEMTVS 

       370        380        390        400        410        420 
AQGKLSSYKF YEAVMSSHAR LTYTKVWNIL QGDAELREHY KPLVGGLEEL HHMYKVLEHA 

       430        440        450        460        470        480 
REVRGGIAFE TEEAKFIFNA ERRIDRVEAV VRNDAHKLIE ECMILANISA AKFVEKNEEP 

       490        500        510        520        530        540 
ALFRVHDQPS EDHVLALRSV LGELGLTLKG GMKPQPKDYA ELMNEVADRP DREMLQTMLL 

       550        560        570        580        590        600 
RSMKQAIYDP ENRGHFGLAL TSYGHFTSPI RRYPDLSLHR AIKYLLSNRH ERWTPTGGWH 

       610        620        630        640        650        660 
SDINEMLQLG MHCSMTERRA DEATRDVADW LKCDFMQDHV GEVFTGIISS VTGFGFFVRL 

       670        680        690        700        710        720 
KDLFIDGLVH VSTLDNDYYR YDNIGQRLIG ESRGQVYRLG DEVEIRVEAV HMDERNIDFA 

       730        740        750        760        770        780 
LISSTRKVRG EGKTARDRAK KPDSREAKPA RRRRSASKAP ANFEPDAAFR KEGDRNAKSD 

       790        800        810 
KPKAKPKKNR DKAKKNAEKT RKIAAATKAK RAKKKSAE 

« Hide

References

[1]"Complete sequence of Pectobacterium carotovorum subsp. carotovorum PC1."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. expand/collapse author list , Balakrishnan V., Glasner J., Perna N.T.
Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PC1 EMBL ACT14461.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001657 Genomic DNA. Translation: ACT14461.1.
RefSeqYP_003018997.1. NC_012917.1.

3D structure databases

ProteinModelPortalC6DE25.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING561230.PC1_3445.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT14461; ACT14461; PC1_3445.
GeneID8134425.
KEGGpct:PC1_3445.
PATRIC20491624. VBIPecCar70489_3462.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0557.
HOGENOMHOG000071120.
KOK12573.
OMAGFFVRLN.
OrthoDBEOG6Q5NRD.

Enzyme and pathway databases

BioCycPCAR561230:GKCK-3526-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
HAMAPMF_01895. RNase_R.
InterProIPR011129. Cold_shock_prot.
IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
IPR013223. RNase_B_OB_dom.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
IPR013668. RNase_R_HTH_12.
[Graphical view]
PfamPF08461. HTH_12. 1 hit.
PF08206. OB_RNB. 2 hits.
PF00575. S1. 1 hit.
[Graphical view]
SMARTSM00357. CSP. 1 hit.
SM00316. S1. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 4 hits.
TIGRFAMsTIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEPS50126. S1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6DE25_PECCP
AccessionPrimary (citable) accession number: C6DE25
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: July 9, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)