C6DE25 (C6DE25_PECCP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribonuclease R HAMAP-Rule MF_01895
Short name=RNase R HAMAP-Rule MF_01895
EC=3.1.13.1 HAMAP-Rule MF_01895

Gene names

Name:	rnr HAMAP-Rule MF_01895
Ordered Locus Names:	PC1_3445 EMBL ACT14461.1

Organism

Pectobacterium carotovorum subsp. carotovorum (strain PC1) [Complete proteome] [HAMAP] EMBL ACT14461.1

Taxonomic identifier

561230 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Pectobacterium › Pectobacterium carotovorum › Pectobacterium carotovorum subsp. carotovorum

Protein attributes

Sequence length	818 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs By similarity. HAMAP-Rule MF_01895
Catalytic activity	Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates. HAMAP-Rule MF_01895 SAAS SAAS011129
Subunit structure	Monomer By similarity. HAMAP-Rule MF_01895
Subcellular location	Cytoplasm By similarity HAMAP-Rule MF_01895 SAAS SAAS011129.
Sequence similarities	Belongs to the RNR ribonuclease family. RNase R subfamily. HAMAP-Rule MF_01895 Contains 1 S1 motif domain. HAMAP-Rule MF_01895 Contains S1 motif domain. SAAS SAAS011129 Contains Smotif domain. SAAS SAAS011129

Ontologies

Keywords
Cellular component	Cytoplasm HAMAP-Rule MF_01895 SAAS SAAS011129
Ligand	RNA-binding SAAS SAAS011129 HAMAP-Rule MF_01895
Molecular function	Exonuclease HAMAP-Rule MF_01895 SAAS SAAS011129 Hydrolase Nuclease
Technical term	Complete proteome
Gene Ontology (GO)
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	RNA binding Inferred from electronic annotation. Source: UniProtKB-HAMAP exoribonuclease II activity Inferred from electronic annotation. Source: UniProtKB-HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Domain	641 – 722	82	S1 motif By similarity HAMAP-Rule MF_01895

Sequences

	Sequence		Length	Mass (Da)
	C6DE25 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: A2A653F19EA32096	FASTA	818	92,930
	10 20 30 40 50 60 MSQDPFLERE AEKYESPIPS REYILAHIAK RDTPISREEL AADLQLTGEE PLEALRRRLR 70 80 90 100 110 120 AMERDGQLIF TRRQCYALPE KLDLLRGTVI GHRDGFGFLR VEGRKDDLYL SAEEMKRAIH 130 140 150 160 170 180 GDVVLAQPLG ADRKGRREGR IVRVLEPRTG QIVGRYFVDA GVGFVVPDDS RLSFDILIPK 190 200 210 220 230 240 EEINGARMGF VVVVELTQRA TRRTKAVGKI VEILGDNMGT GLAVDIALRT HDIPHTWPPK 250 260 270 280 290 300 VEEQVKDLAE EVPEAAKKGR VDLRKLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA 310 320 330 340 350 360 DVSYYVRPNT PLDHEARARG TSVYFPSQVV PMLPEVLSNG LCSLNPQVDR LCMVCEMTVS 370 380 390 400 410 420 AQGKLSSYKF YEAVMSSHAR LTYTKVWNIL QGDAELREHY KPLVGGLEEL HHMYKVLEHA 430 440 450 460 470 480 REVRGGIAFE TEEAKFIFNA ERRIDRVEAV VRNDAHKLIE ECMILANISA AKFVEKNEEP 490 500 510 520 530 540 ALFRVHDQPS EDHVLALRSV LGELGLTLKG GMKPQPKDYA ELMNEVADRP DREMLQTMLL 550 560 570 580 590 600 RSMKQAIYDP ENRGHFGLAL TSYGHFTSPI RRYPDLSLHR AIKYLLSNRH ERWTPTGGWH 610 620 630 640 650 660 SDINEMLQLG MHCSMTERRA DEATRDVADW LKCDFMQDHV GEVFTGIISS VTGFGFFVRL 670 680 690 700 710 720 KDLFIDGLVH VSTLDNDYYR YDNIGQRLIG ESRGQVYRLG DEVEIRVEAV HMDERNIDFA 730 740 750 760 770 780 LISSTRKVRG EGKTARDRAK KPDSREAKPA RRRRSASKAP ANFEPDAAFR KEGDRNAKSD 790 800 810 KPKAKPKKNR DKAKKNAEKT RKIAAATKAK RAKKKSAE

References

[1]

"Complete sequence of Pectobacterium carotovorum subsp. carotovorum PC1." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. , Balakrishnan V., Glasner J., Perna N.T. Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PC1 EMBL ACT14461.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001657 Genomic DNA. Translation: ACT14461.1.
RefSeq	YP_003018997.1. NC_012917.1.
3D structure databases
ProteinModelPortal	C6DE25.
ModBase	Search...
MobiDB	Search...
Protein-protein interaction databases
STRING	561230.PC1_3445.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACT14461; ACT14461; PC1_3445.
GeneID	8134425.
KEGG	pct:PC1_3445.
PATRIC	20491624. VBIPecCar70489_3462.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0557.
HOGENOM	HOG000071120.
KO	K12573.
OMA	GFFVRLN.
OrthoDB	EOG6Q5NRD.
ProtClustDB	PRK11642.
Enzyme and pathway databases
BioCyc	PCAR561230:GKCK-3526-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
HAMAP	MF_01895. RNase_R.
InterPro	IPR011129. Cold_shock_prot. IPR012340. NA-bd_OB-fold. IPR003029. Rbsml_prot_S1_RNA-bd_dom. IPR022967. RNA-binding_domain_S1. IPR013223. RNase_B_OB_dom. IPR004476. RNase_II/RNase_R. IPR011805. RNase_R. IPR013668. RNase_R_HTH_12. [Graphical view]
Pfam	PF08461. HTH_12. 1 hit. PF08206. OB_RNB. 2 hits. PF00575. S1. 1 hit. [Graphical view]
SMART	SM00357. CSP. 1 hit. SM00316. S1. 1 hit. [Graphical view]
SUPFAM	SSF50249. SSF50249. 4 hits.
TIGRFAMs	TIGR00358. 3_prime_RNase. 1 hit. TIGR02063. RNase_R. 1 hit.
PROSITE	PS50126. S1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6DE25_PECCP

Accession

Primary (citable) accession number: C6DE25

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	April 16, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)