C6DA18 (C6DA18_PECCP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcriptional regulator, GntR family with aminotransferase domain EMBL ACT13774.1

Gene names

Ordered Locus Names:

PC1_2744

Organism

Pectobacterium carotovorum subsp. carotovorum (strain PC1) [Complete proteome] [HAMAP] EMBL ACT13774.1

Taxonomic identifier

561230 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Pectobacterium › Erwinia carotovora › Pectobacterium carotovorum subsp. carotovorum

Protein attributes

Sequence length	483 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH gntR-type DNA-binding domain. SAAS SAAS000524 RuleBase RU000706

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS000524 RuleBase RU000706
Ligand	DNA-binding SAAS SAAS000524 RuleBase RU000706
Molecular function	Aminotransferase EMBL ACT13774.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro transaminase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6DA18 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 3650E270BD5C1D75	FASTA	483	53,612
	10 20 30 40 50 60 MAKFEQLAHQ IREQLQEGIW QPGDKLPSLR EKSLHSGMSL MTVLHAYQLL ESQGLIVSRP 70 80 90 100 110 120 QSGYYAAPQL SALPADSLHS PVGQERVQLT EDVDVNAFIF DVLQASKDPA VMPFGSAFPD 130 140 150 160 170 180 PQLFPQRQLT RSLASVARHM QPQSALDNLP PGNESLRKNI AQRYALQGIA VSPDEIVITA 190 200 210 220 230 240 GAMESLNLSL QVLTEPGDYV VIESPAFYGA LQAIERLKLK AIAIATDPQQ GIDLDALQQA 250 260 270 280 290 300 LNDYPIKACW LMTNFHNPLG CTLSWEKKQQ LVAMLEKHGV GLVEDDVYSE LYAGLQRPLP 310 320 330 340 350 360 AKALDKKGTI LHCSSFSKNL VAGFRVGWVA AGRYAGSIQR LQLMSTLSTS APMQLAIADY 370 380 390 400 410 420 LATSSYDSHL RRLRRALEQR KHAALQSLRR HLPGDVRINH SQGGYFLWLE LPEGISSTEL 430 440 450 460 470 480 YRRALARGVS IAPGKMFTTG DKYDRYFRFN ASYAWDDRCE QSVIVLAALI RTQIGERPPR SPL

References

[1]

"Complete sequence of Pectobacterium carotovorum subsp. carotovorum PC1." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. , Balakrishnan V., Glasner J., Perna N.T. Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PC1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001657 Genomic DNA. Translation: ACT13774.1.
RefSeq	YP_003018310.1. NC_012917.1.
3D structure databases
ProteinModelPortal	C6DA18.
ModBase	Search...
Protein-protein interaction databases
STRING	561230.PC1_2744.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACT13774; ACT13774; PC1_2744.
GeneID	8133697.
KEGG	pct:PC1_2744.
PATRIC	20490178. VBIPecCar70489_2766.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1167.
HOGENOM	HOG000133006.
OMA	IPVHPRD.
ProtClustDB	CLSK2523000.
Family and domain databases
Gene3D	1.10.10.10. 1 hit. 3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR004839. Aminotransferase_I/II. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. IPR000524. Tscrpt_reg_HTH_GntR. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF00155. Aminotran_1_2. 1 hit. PF00392. GntR. 1 hit. [Graphical view]
SMART	SM00345. HTH_GNTR. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
PROSITE	PS50949. HTH_GNTR. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6DA18_PECCP

Accession

Primary (citable) accession number: C6DA18

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)