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Protein
Submitted name:

Diguanylate cyclase

Gene

PC1_2619

Organism
Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciPCAR561230:GKCK-2668-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Diguanylate cyclaseImported
Gene namesi
Ordered Locus Names:PC1_2619Imported
OrganismiPectobacterium carotovorum subsp. carotovorum (strain PC1)Imported
Taxonomic identifieri561230 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
ProteomesiUP000002736 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi561230.PC1_2619.

Structurei

3D structure databases

ProteinModelPortaliC6D9C2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains GGDEF domain.SAAS annotation

Phylogenomic databases

eggNOGiCOG2199.
HOGENOMiHOG000006777.
KOiK13069.
OMAiDGHPDYE.
OrthoDBiEOG6G4VQG.

Family and domain databases

Gene3Di1.10.490.10. 1 hit.
InterProiIPR000160. GGDEF_dom.
IPR009050. Globin-like.
IPR012292. Globin/Proto.
IPR029787. Nucleotide_cyclase.
[Graphical view]
PfamiPF00990. GGDEF. 1 hit.
[Graphical view]
SMARTiSM00267. GGDEF. 1 hit.
[Graphical view]
SUPFAMiSSF46458. SSF46458. 1 hit.
SSF55073. SSF55073. 1 hit.
TIGRFAMsiTIGR00254. GGDEF. 1 hit.
PROSITEiPS50887. GGDEF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6D9C2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNELLNVNEQ RDNDELDYNQ VITSEWTQLI ATTSQKSFNL LRAISEQKAS
60 70 80 90 100
DFADKFYSYM LKDQEASLFL SSQQVHDRLH GSMSKWIADI LTNTGEHLVD
110 120 130 140 150
LINHQKKIGQ IHARIGIPVD LVERGARRLK WHLYEDIAQV AEDKALCFDA
160 170 180 190 200
MRFASISMDI AIEIMSKTYS QSHDLAAKNE ESYRLFSILE NASMERERQN
210 220 230 240 250
ASLLNWENAF IFSVATGTPL SSIQDLSDSE FGLWFNHKGK SSFSNIQGIR
260 270 280 290 300
TIASIITETD EYIRGYSTTA LLTQQDYAPL LKAVRSKIYK INMLLGSLFD
310 320 330 340 350
EVQKLESGKD TLTLLLNRRF LPTILRHEIS LAMHSSTPLS IAMIDIDHFK
360 370 380 390 400
TVNDTYGHAA GDNILKRIAE VLYESTRNSD YVFRYGGEEF MIVLIETPKV
410 420 430 440 450
AAHTIIERLR KKIQDHPIHL QNGESITMTI SAGIAVYSGH PDYECLIKAA
460 470
DDALYQAKAN GRNRIEYAQE E
Length:471
Mass (Da):53,575
Last modified:September 1, 2009 - v1
Checksum:i7ED465E0B440068A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001657 Genomic DNA. Translation: ACT13649.1.
RefSeqiWP_015840820.1. NC_012917.1.

Genome annotation databases

EnsemblBacteriaiACT13649; ACT13649; PC1_2619.
KEGGipct:PC1_2619.
PATRICi20489916. VBIPecCar70489_2640.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001657 Genomic DNA. Translation: ACT13649.1.
RefSeqiWP_015840820.1. NC_012917.1.

3D structure databases

ProteinModelPortaliC6D9C2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi561230.PC1_2619.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACT13649; ACT13649; PC1_2619.
KEGGipct:PC1_2619.
PATRICi20489916. VBIPecCar70489_2640.

Phylogenomic databases

eggNOGiCOG2199.
HOGENOMiHOG000006777.
KOiK13069.
OMAiDGHPDYE.
OrthoDBiEOG6G4VQG.

Enzyme and pathway databases

BioCyciPCAR561230:GKCK-2668-MONOMER.

Family and domain databases

Gene3Di1.10.490.10. 1 hit.
InterProiIPR000160. GGDEF_dom.
IPR009050. Globin-like.
IPR012292. Globin/Proto.
IPR029787. Nucleotide_cyclase.
[Graphical view]
PfamiPF00990. GGDEF. 1 hit.
[Graphical view]
SMARTiSM00267. GGDEF. 1 hit.
[Graphical view]
SUPFAMiSSF46458. SSF46458. 1 hit.
SSF55073. SSF55073. 1 hit.
TIGRFAMsiTIGR00254. GGDEF. 1 hit.
PROSITEiPS50887. GGDEF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Pectobacterium carotovorum subsp. carotovorum PC1."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
    , Balakrishnan V., Glasner J., Perna N.T.
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PC1Imported.

Entry informationi

Entry nameiC6D9C2_PECCP
AccessioniPrimary (citable) accession number: C6D9C2
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: July 22, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.