Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Rhamnogalacturonate lyase

Gene

PC1_0682

Organism
Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionLyaseImported

Protein family/group databases

CAZyiPL4 Polysaccharide Lyase Family 4

Names & Taxonomyi

Protein namesi
Submitted name:
Rhamnogalacturonate lyaseImported
Gene namesi
Ordered Locus Names:PC1_0682Imported
OrganismiPectobacterium carotovorum subsp. carotovorum (strain PC1)Imported
Taxonomic identifieri561230 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesPectobacteriaceaePectobacterium
Proteomesi
  • UP000002736 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Sequence analysisAdd BLAST20
ChainiPRO_500296401721 – 576Sequence analysisAdd BLAST556

Interactioni

Protein-protein interaction databases

STRINGi561230.PC1_0682

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini344 – 400fn3_3InterPro annotationAdd BLAST57
Domaini418 – 573CBM-likeInterPro annotationAdd BLAST156

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4108QEY Bacteria
ENOG410YE12 LUCA
HOGENOMiHOG000142194
KOiK18195
OMAiQPTGFRN
OrthoDBiPOG091H1HV2

Family and domain databases

CDDicd10316 RGL4_M, 1 hit
InterProiView protein in InterPro
IPR029413 RG-lyase_II
IPR029411 RG-lyase_III
IPR010325 Rhamnogal_lyase
PfamiView protein in Pfam
PF14683 CBM-like, 1 hit
PF14686 fn3_3, 1 hit
PF06045 Rhamnogal_lyase, 1 hit

Sequencei

Sequence statusi: Complete.

C6D929-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRSVLLLVG AMLAPYSYSA QDNAVSLSVS GLNTVLDNGL LSVAFGEDGS
60 70 80 90 100
AVRMVTGGKN IVTNLSGAAR DPSKTRSAYL DYYINDVHAK GVKDFVPERV
110 120 130 140 150
EVLRNDREMA HVAYIDERDG LLRLEYHLIM RRGVSGLYSY VVAENRGSQD
160 170 180 190 200
VKVSELRNVY RFDPARLDHL YNGDRQGKPL LYSQLEASPK VQDETWRLPD
210 220 230 240 250
GSIYSKYDFA GYMRAAPFWG VFGNGVGAWL IHGNREYFSG DALKQDLLVH
260 270 280 290 300
QDAIILNYMT GSHFGTPDMV APPGWKKFYG PWLLYINQGD TEQMLADVRR
310 320 330 340 350
QALTETVSWP YQWVDDSRYV RDRTQVSGRV ASQQPMTVVL SSSLDEPFDV
360 370 380 390 400
QTRGYSYQAT TDTEGNFAIS HVRPGNYHLA VYANSGTQPG ILAEQTLSVS
410 420 430 440 450
GDKQALPVIA LPKAEPVIWA IGQANRQASE FRFGDEARNT LWQHEVPANL
460 470 480 490 500
TFDIGRSDYQ RDWYYAQTKP GKWDICFALQ PEKKTYFLNI ALAAASNSGM
510 520 530 540 550
SEPTLPQLAV AVNGRTLETL TYENDKTIYR GALQSGRYHL ARIPVSSHLL
560 570
KNGNNTITLQ LKGGSVMYDV VTLSEE
Length:576
Mass (Da):64,325
Last modified:September 1, 2009 - v1
Checksum:iF3C4933DC6806396
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001657 Genomic DNA Translation: ACT11737.1

Genome annotation databases

EnsemblBacteriaiACT11737; ACT11737; PC1_0682
KEGGipct:PC1_0682

Similar proteinsi

Entry informationi

Entry nameiC6D929_PECCP
AccessioniPrimary (citable) accession number: C6D929
Entry historyiIntegrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: March 28, 2018
This is version 49 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported