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Protein
Submitted name:

Rhamnogalacturonate lyase

Gene

PC1_0682

Organism
Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciPCAR561230:GKCK-707-MONOMER.

Protein family/group databases

CAZyiPL4. Polysaccharide Lyase Family 4.

Names & Taxonomyi

Protein namesi
Submitted name:
Rhamnogalacturonate lyaseImported
Gene namesi
Ordered Locus Names:PC1_0682Imported
OrganismiPectobacterium carotovorum subsp. carotovorum (strain PC1)Imported
Taxonomic identifieri561230 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
Proteomesi
  • UP000002736 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020Sequence analysisAdd
BLAST
Chaini21 – 576556Sequence analysisPRO_5002964017Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi561230.PC1_0682.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini343 – 40058fn3_3InterPro annotationAdd
BLAST
Domaini418 – 573156CBM-likeInterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4108QEY. Bacteria.
ENOG410YE12. LUCA.
HOGENOMiHOG000142194.
KOiK18195.
OMAiNDRFLTP.
OrthoDBiPOG091H1HV2.

Family and domain databases

CDDicd10316. RGL4_M. 1 hit.
Gene3Di2.60.120.260. 1 hit.
2.60.40.1120. 1 hit.
InterProiIPR013784. Carb-bd-like_fold.
IPR014766. CarboxyPept_regulatory_dom.
IPR011013. Gal_mutarotase_SF_dom.
IPR008979. Galactose-bd-like.
IPR029413. RG-lyase_II.
IPR029411. RG-lyase_III.
IPR010325. Rhamnogal_lyase.
[Graphical view]
PfamiPF14683. CBM-like. 1 hit.
PF14686. fn3_3. 1 hit.
PF06045. Rhamnogal_lyase. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF49785. SSF49785. 1 hit.
SSF74650. SSF74650. 1 hit.

Sequencei

Sequence statusi: Complete.

C6D929-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRSVLLLVG AMLAPYSYSA QDNAVSLSVS GLNTVLDNGL LSVAFGEDGS
60 70 80 90 100
AVRMVTGGKN IVTNLSGAAR DPSKTRSAYL DYYINDVHAK GVKDFVPERV
110 120 130 140 150
EVLRNDREMA HVAYIDERDG LLRLEYHLIM RRGVSGLYSY VVAENRGSQD
160 170 180 190 200
VKVSELRNVY RFDPARLDHL YNGDRQGKPL LYSQLEASPK VQDETWRLPD
210 220 230 240 250
GSIYSKYDFA GYMRAAPFWG VFGNGVGAWL IHGNREYFSG DALKQDLLVH
260 270 280 290 300
QDAIILNYMT GSHFGTPDMV APPGWKKFYG PWLLYINQGD TEQMLADVRR
310 320 330 340 350
QALTETVSWP YQWVDDSRYV RDRTQVSGRV ASQQPMTVVL SSSLDEPFDV
360 370 380 390 400
QTRGYSYQAT TDTEGNFAIS HVRPGNYHLA VYANSGTQPG ILAEQTLSVS
410 420 430 440 450
GDKQALPVIA LPKAEPVIWA IGQANRQASE FRFGDEARNT LWQHEVPANL
460 470 480 490 500
TFDIGRSDYQ RDWYYAQTKP GKWDICFALQ PEKKTYFLNI ALAAASNSGM
510 520 530 540 550
SEPTLPQLAV AVNGRTLETL TYENDKTIYR GALQSGRYHL ARIPVSSHLL
560 570
KNGNNTITLQ LKGGSVMYDV VTLSEE
Length:576
Mass (Da):64,325
Last modified:September 1, 2009 - v1
Checksum:iF3C4933DC6806396
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001657 Genomic DNA. Translation: ACT11737.1.

Genome annotation databases

EnsemblBacteriaiACT11737; ACT11737; PC1_0682.
KEGGipct:PC1_0682.
PATRICi20485956. VBIPecCar70489_0683.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001657 Genomic DNA. Translation: ACT11737.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi561230.PC1_0682.

Protein family/group databases

CAZyiPL4. Polysaccharide Lyase Family 4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACT11737; ACT11737; PC1_0682.
KEGGipct:PC1_0682.
PATRICi20485956. VBIPecCar70489_0683.

Phylogenomic databases

eggNOGiENOG4108QEY. Bacteria.
ENOG410YE12. LUCA.
HOGENOMiHOG000142194.
KOiK18195.
OMAiNDRFLTP.
OrthoDBiPOG091H1HV2.

Enzyme and pathway databases

BioCyciPCAR561230:GKCK-707-MONOMER.

Family and domain databases

CDDicd10316. RGL4_M. 1 hit.
Gene3Di2.60.120.260. 1 hit.
2.60.40.1120. 1 hit.
InterProiIPR013784. Carb-bd-like_fold.
IPR014766. CarboxyPept_regulatory_dom.
IPR011013. Gal_mutarotase_SF_dom.
IPR008979. Galactose-bd-like.
IPR029413. RG-lyase_II.
IPR029411. RG-lyase_III.
IPR010325. Rhamnogal_lyase.
[Graphical view]
PfamiPF14683. CBM-like. 1 hit.
PF14686. fn3_3. 1 hit.
PF06045. Rhamnogal_lyase. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF49785. SSF49785. 1 hit.
SSF74650. SSF74650. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiC6D929_PECCP
AccessioniPrimary (citable) accession number: C6D929
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: September 7, 2016
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.