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C6D8U9 (C6D8U9_PAESJ) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
S-layer domain protein EMBL ACT03279.1
Gene names
Ordered Locus Names:Pjdr2_4665
OrganismPaenibacillus sp. (strain JDR-2) [Complete proteome] [HAMAP] EMBL ACT03279.1
Taxonomic identifier324057 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacilli › Bacillales › Paenibacillaceae › Paenibacillus

Protein attributes

Sequence length2026 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3232 Potential EMBL ACT03279.1
Chain33 – 20261994 Potential EMBL ACT03279.1
PRO_5000485692

Sequences

Sequence LengthMass (Da)Tools
C6D8U9 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 70C39ED8C09FDB74

FASTA2,026216,991
        10         20         30         40         50         60 
MKISNPLQKS LSFVLALVLA IPLISPAKAA AAESAPTMVT IDGDAADTNP ANTFKGYGLV 

        70         80         90        100        110        120 
SANNTSRLLL DYKEEHPDQY WEMMNLLFNQ DTGAGINDIK IEMGNDSNTS SGTEPSTKRS 

       130        140        150        160        170        180 
ADEEANVRRG AGYIFAADAK TINPDIKVSI LRWTQPGWVQ PWSDGNTDPS QPATLAAYER 

       190        200        210        220        230        240 
MYKWYKDTAI AIHNTYGYDL DYINPDRNET GTPNVNFIKW FANRMRSDAE FPNYNKIKII 

       250        260        270        280        290        300 
ASDENTSLNI PTRMLADPDL MNAVDVMAYH YNMATSADYL KVNEQNQKEV WYSEGVAPQT 

       310        320        330        340        350        360 
FAKYRANSDE KFGGVASALD VAGRFIGMYT QGKRTHYMFQ PAIGAFYSGA PYSSKELIGA 

       370        380        390        400        410        420 
RDPWSGYYVP DVGIQTVMQF TQFAANDWMY IPDASLGVIG SRGNSEMDGN AAGAEYNRLA 

       430        440        450        460        470        480 
FVSPDKKDFS VVMVNDSDRV AEYQFDVKKN IANAGNPLQV WETRGADAGQ AYDANWYKQL 

       490        500        510        520        530        540 
ANLASTDNGD VYSYTLTVKP HSMVSVTSTT VNPNTGNPRT PYTRNNDIPK QSVLDVDGSN 

       550        560        570        580        590        600 
PAVLYEDDFE YADYPADSNG LSYMERRGGT PRYTADQGGA FEVYPGIGQD GSNGMKQIVY 

       610        620        630        640        650        660 
SGNKPGTWAT TPFSYTVLGD ERWANYETSI DFKMDQDPTH TGDNYVAIGM RHKLNGTTSD 

       670        680        690        700        710        720 
SESGYKFRIY ADGTWRLIRL TATVASGTLT SFDASKWHRI SIKGASQFIT ASLDGEVVTT 

       730        740        750        760        770        780 
YNDTASGAPL SGQVMIQTSL QQSVFDNLKV EAVNGYVPYA TERVDDLDSR VTYHEGSFPW 

       790        800        810        820        830        840 
SHSISGGAGR LNRTISTSGT SILFSSTSKT ESTLNRWYMV KNEGNTAAWS SNSTNAWAGE 

       850        860        870        880        890        900 
TGSYASLTFN GTGISVYGQG QGTNAVVRMD VYLDDFGTGY NHDSSKRVVT SKAYANNSSS 

       910        920        930        940        950        960 
QLIYQISGLT PGVHNVKIVK TAAASGSGNY LSIEKAVVTA DAADPTSFEL PFTGTGFRLV 

       970        980        990       1000       1010       1020 
GDTGAATIDV AVDDKPVGTN VAIPAATVNR TDSYSYEGLS YGPHTLKVAV KDGSFSIDAI 

      1030       1040       1050       1060       1070       1080 
DILGEVYGTV SKAALADFIT EVSEYTEADY MPTEWGAFTA ALEAAQAILA DEAATQYKVD 

      1090       1100       1110       1120       1130       1140 
LAFNNLKDAS SALKLRIQPV AVTGTYPTIV ATRSDQAVTG LPNTVKVTLA DGTTDADAAV 

      1150       1160       1170       1180       1190       1200 
HWLNNTPERF NTPYTSVQVT GEIVGGNNLS ITVQVEVVPD NLVYFIDPGI SDSTTTPPYN 

      1210       1220       1230       1240       1250       1260 
AIKALVGDAL LNNTADQPST GDTVWGHTPT DANYKYKALT GAVVATDKSQ TGVYGADTIN 

      1270       1280       1290       1300       1310       1320 
NPLGYVLPLA SGDYTITSFH RDWWNNTNRT MDITLSYKDA DNNVVTLPVR TGLIAGPDGT 

      1330       1340       1350       1360       1370       1380 
TVTYDFTLPV DSTVTYSINN TYSGNQAALI SYLGVAKRVA DPADVQALET AKSIIEAAEY 

      1390       1400       1410       1420       1430       1440 
SVFKVKANSE DEVKAWLADA IQGLDGLSAT GASIDNITLD AFQAATEDTN GSFSFTVQLS 

      1450       1460       1470       1480       1490       1500 
KGLAKETAAY EGIIAAKDTV KPVISLNGEA VVNLPTGAEY TDAGATALDD WDGDLTGSIV 

      1510       1520       1530       1540       1550       1560 
TTITNDVNDG TTLDTSVAGT YTFHYNVSDA AGNAADEVTR SVIVSEDPDT VKPVITLLGD 

      1570       1580       1590       1600       1610       1620 
ATVNLANGAS YTDAGATASD DRDGDISDQI ITTITNNIND GTTLDTSVAG NYTFHYNVSD 

      1630       1640       1650       1660       1670       1680 
AAGNAADEVT RTVIVAERVQ PPVVTNPTPS EPTVPATTQV LTSGDLQNAV SGTITVTVAN 

      1690       1700       1710       1720       1730       1740 
GKNTVQFPSN VIQLVGDNTL KLVMDGMTLS FTKDDLAGIM GAVTGAKAAG AKISFTAVKV 

      1750       1760       1770       1780       1790       1800 
PNGEVNSLIN NQEVNSTVKL TTASTVYDFR LSVIAADGTI VPVSTFDEPL KLTFTVDPNA 

      1810       1820       1830       1840       1850       1860 
NPDLLGVYYI AADGALQYVG GTLADGVMTA YVKHFSQYAV LEYDKSFTDV SPAFWAHDII 

      1870       1880       1890       1900       1910       1920 
QQIAAKHIIT GVSDTLFNPE DNVTRAEFTA MIARALGLEE VDGSAIFLDV KADAWYAGYI 

      1930       1940       1950       1960       1970       1980 
GAVSKAGIVM GRSSIAFAPN DAITREEMAV MAVRAYEYVK GKQAEVEKDI ASFADKSSIS 

      1990       2000       2010       2020 
AWAQDAASLA QELGLIKGRS NNLFAPQALM TRAESAQVMG NLIGQL

« Hide

References

[1]"Complete genome sequence of Paenibacillus sp. strain JDR-2."
Chow V., Nong G., St John F.J., Rice J.D., Dickstein E., Chertkov O., Bruce D., Detter C., Brettin T., Han J., Woyke T., Pitluck S., Nolan M., Pati A., Martin J., Copeland A., Land M.L., Goodwin L. expand/collapse author list , Jones J.B., Ingram L.O., Shanmugam K.T., Preston J.F.
Stand. Genomic Sci. 6:1-10(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDR-2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001656 Genomic DNA. Translation: ACT03279.1.
RefSeqYP_003013365.1. NC_012914.1.

3D structure databases

ProteinModelPortalC6D8U9.
ModBaseSearch...

Protein-protein interaction databases

STRING324057.Pjdr2_4665.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT03279; ACT03279; Pjdr2_4665.
GeneID8125651.
KEGGpjd:Pjdr2_4665.
PATRIC22839845. VBIPaeSp118865_4629.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG76999.

Enzyme and pathway databases

BioCycPSP324057:GH5H-4763-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR011081. Big_4.
IPR001286. Glyco_hydro_59.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR001119. S-layer_homology_dom.
[Graphical view]
PANTHERPTHR15172. PTHR15172. 1 hit.
PfamPF07532. Big_4. 1 hit.
PF02057. Glyco_hydro_59. 1 hit.
PF00395. SLH. 3 hits.
[Graphical view]
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
PROSITEPS51272. SLH. 3 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6D8U9_PAESJ
AccessionPrimary (citable) accession number: C6D8U9
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info