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C6D603 (C6D603_PAESJ) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Pjdr2_5902
OrganismPaenibacillus sp. (strain JDR-2) [Complete proteome] [HAMAP] EMBL ACT04506.1
Taxonomic identifier324057 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus

Protein attributes

Sequence length395 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
C6D603 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: B17FA6FD2CFA2D1C

FASTA39542,573
        10         20         30         40         50         60 
MIDTYKAFVE PELELPPVGE GPLRGLTFAV KDVFAIKGYT SGAGNPDWLR THSPWEKTAS 

        70         80         90        100        110        120 
SISKLLASGA RLTGTTHTDE LMYSINGQND HYGTPVNPKA PDRIPGGSSS GSAVAVAAGA 

       130        140        150        160        170        180 
VDFALGTDTG GSVRVPAAYC GIYGFRPTHD FVSIDGVIPL APSYDTVGWM ARDISLLRQV 

       190        200        210        220        230        240 
GDVLLPGTTD AETPRQDFRR LIFAEEAWEK AEPSCRKALG SVCIQLVQTE GMTQEWRSVA 

       250        260        270        280        290        300 
PEGLEAWSHA FRTTQGREIW QTHGEWIVRE KPVFGESIGA RFASASTISG AEAERDGALR 

       310        320        330        340        350        360 
EIIRKRLREL LGDDGLLIIP TIPGTAPSRT IHGPAVEERR FRTMQLSCIA GLSGLPQVTI 

       370        380        390 
PAGEVDGAPI ALSVIAGVKQ DLKLLRRAEQ FEKGR 

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References

[1]"Complete genome sequence of Paenibacillus sp. strain JDR-2."
Chow V., Nong G., St John F.J., Rice J.D., Dickstein E., Chertkov O., Bruce D., Detter C., Brettin T., Han J., Woyke T., Pitluck S., Nolan M., Pati A., Martin J., Copeland A., Land M.L., Goodwin L. expand/collapse author list , Jones J.B., Ingram L.O., Shanmugam K.T., Preston J.F.
Stand. Genomic Sci. 6:1-10(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDR-2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001656 Genomic DNA. Translation: ACT04506.1.
RefSeqYP_003014592.1. NC_012914.1.

3D structure databases

ProteinModelPortalC6D603.
ModBaseSearch...

Protein-protein interaction databases

STRING324057.Pjdr2_5902.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT04506; ACT04506; Pjdr2_5902.
GeneID8129519.
KEGGpjd:Pjdr2_5902.
PATRIC22842339. VBIPaeSp118865_5852.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0154.
HOGENOMHOG000116697.
OMAMERWRIA.
ProtClustDBCLSK2815066.

Enzyme and pathway databases

BioCycPSP324057:GH5H-6024-MONOMER.

Family and domain databases

Gene3D3.90.1300.10. 1 hit.
InterProIPR000120. Amidase.
IPR020556. Amidase_CS.
IPR023631. Amidase_dom.
[Graphical view]
PANTHERPTHR11895. PTHR11895. 1 hit.
PfamPF01425. Amidase. 1 hit.
[Graphical view]
SUPFAMSSF75304. Amidase_sig_enz. 1 hit.
PROSITEPS00571. AMIDASES. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6D603_PAESJ
AccessionPrimary (citable) accession number: C6D603
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 1, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)