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C6D530

- C6D530_PAESJ

UniProt

C6D530 - C6D530_PAESJ

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Protein
Bifunctional protein PyrR
Gene
pyrR, Pjdr2_3865
Organism
Paenibacillus sp. (strain JDR-2)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant By similarity.UniRule annotation
Regulates transcriptional attenuation of the pyrimidine nucleotide (pyr) operon by binding in a uridine-dependent manner to specific sites on pyr mRNA. This disrupts an antiterminator hairpin in the RNA and favors formation of a downstream transcription terminator, leading to a reduced expression of downstream genes By similarity.UniRule annotation

Catalytic activityi

UMP + diphosphate = uracil + 5-phospho-alpha-D-ribose 1-diphosphate.UniRule annotationSAAS annotations

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-HAMAP
  2. uracil phosphoribosyltransferase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. DNA-templated transcription, termination Source: UniProtKB-HAMAP
  2. nucleoside metabolic process Source: InterPro
  3. regulation of transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosyltransferaseUniRule annotationSAAS annotationsImported, Transferase

Keywords - Biological processi

Transcription, Transcription regulation, Transcription terminationUniRule annotation

Keywords - Ligandi

RNA-bindingUniRule annotation

Enzyme and pathway databases

BioCyciPSP324057:GH5H-3958-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Bifunctional protein PyrRUniRule annotation
Gene namesi
Name:pyrRUniRule annotation
Ordered Locus Names:Pjdr2_3865Imported
OrganismiPaenibacillus sp. (strain JDR-2)Imported
Taxonomic identifieri324057 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
ProteomesiUP000002510: Chromosome

Interactioni

Subunit structurei

Homodimer and homohexamer; in equilibrium By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi324057.Pjdr2_3865.

Structurei

3D structure databases

ProteinModelPortaliC6D530.
SMRiC6D530. Positions 7-183.

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi107 – 11913PRPP-binding By similarityUniRule annotation
Add
BLAST

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG2065.
HOGENOMiHOG000245770.
KOiK02825.
OMAiLMDMGRP.
OrthoDBiEOG61VZD8.

Family and domain databases

Gene3Di3.40.50.2020. 1 hit.
HAMAPiMF_01219. PyrR.
InterProiIPR000836. PRibTrfase_dom.
IPR029057. PRTase-like.
IPR023050. PyrR.
[Graphical view]
PfamiPF00156. Pribosyltran. 1 hit.
[Graphical view]
SUPFAMiSSF53271. SSF53271. 1 hit.

Sequencei

Sequence statusi: Complete.

C6D530-1 [UniParc]FASTAAdd to Basket

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MEEEHLVIMD ETAIRRALTR IAHEIVEKNK GIDNCVLIGI RTRGIYLARR    50
IADRIQDIEG KPVEVRELDI TSYRDDRKAA SVDTRVELAA VIGDLNGELF 100
SAHDKKVILC DDVLFTGRTI RAAMDALMDC GRPESIQLAV LVDRGHRELP 150
IRPDYVGKNV PTSKQEQIDV SLTEIDLKDQ VMIIHQRGQV 190
Length:190
Mass (Da):21,464
Last modified:September 1, 2009 - v1
Checksum:i80202698C9002072
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001656 Genomic DNA. Translation: ACT02495.1.
RefSeqiWP_015845435.1. NC_012914.1.
YP_003012581.1. NC_012914.1.

Genome annotation databases

EnsemblBacteriaiACT02495; ACT02495; Pjdr2_3865.
GeneIDi8126390.
KEGGipjd:Pjdr2_3865.
PATRICi22838265. VBIPaeSp118865_3846.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001656 Genomic DNA. Translation: ACT02495.1 .
RefSeqi WP_015845435.1. NC_012914.1.
YP_003012581.1. NC_012914.1.

3D structure databases

ProteinModelPortali C6D530.
SMRi C6D530. Positions 7-183.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 324057.Pjdr2_3865.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACT02495 ; ACT02495 ; Pjdr2_3865 .
GeneIDi 8126390.
KEGGi pjd:Pjdr2_3865.
PATRICi 22838265. VBIPaeSp118865_3846.

Phylogenomic databases

eggNOGi COG2065.
HOGENOMi HOG000245770.
KOi K02825.
OMAi LMDMGRP.
OrthoDBi EOG61VZD8.

Enzyme and pathway databases

BioCyci PSP324057:GH5H-3958-MONOMER.

Family and domain databases

Gene3Di 3.40.50.2020. 1 hit.
HAMAPi MF_01219. PyrR.
InterProi IPR000836. PRibTrfase_dom.
IPR029057. PRTase-like.
IPR023050. PyrR.
[Graphical view ]
Pfami PF00156. Pribosyltran. 1 hit.
[Graphical view ]
SUPFAMi SSF53271. SSF53271. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JDR-2.

Entry informationi

Entry nameiC6D530_PAESJ
AccessioniPrimary (citable) accession number: C6D530
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: September 3, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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