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Protein

Ribosomal RNA small subunit methyltransferase B

Gene

Pjdr2_3753

Organism
Paenibacillus sp. (strain JDR-2)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseSAAS annotation, Transferase

Keywords - Biological processi

rRNA processingSAAS annotation

Keywords - Ligandi

RNA-bindingSAAS annotation, S-adenosyl-L-methionineSAAS annotation

Enzyme and pathway databases

BioCyciPSP324057:GH5H-3842-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase BSAAS annotation (EC:2.1.1.-SAAS annotation)
Gene namesi
Ordered Locus Names:Pjdr2_3753Imported
OrganismiPaenibacillus sp. (strain JDR-2)Imported
Taxonomic identifieri324057 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
Proteomesi
  • UP000002510 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi324057.Pjdr2_3753.

Structurei

3D structure databases

ProteinModelPortaliC6D4F5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini208 – 490283SAM_MT_RSMB_NOPInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiPOG091H02E2.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6D4F5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSERETFKSR PKRKPGGKGH GRGPGQEGRK EQRPARVRTP RELALDTLVK
60 70 80 90 100
VAETGAYSNL QLNRVLQEAQ LQRADAALVT ELVYGTIQRQ LTLDHWLGKF
110 120 130 140 150
AAKGLRKLEP WVHQLLRMSA YQLLYLDRIP AHAAVNEAVT IAKRRGHQGI
160 170 180 190 200
SGMVNGILRS IDRNRAELTV DAIADKNPVV QISVRYSYPE WLVERWVKAY
210 220 230 240 250
GAETAEAICA SGNEPPHASV RVNPLRSSRN EVLSLLTEQG GDAEASRLAP
260 270 280 290 300
AGIVVRRGGN LADTEGFRDG LWTMQDESSM LVAEVVAPKA GMQVLDCCAA
310 320 330 340 350
PGGKTTHMAE LMSGKGKVYA NDLHPHKRQL IVDQAVRLGL QNIEAITEDA
360 370 380 390 400
GKLGERFAPA SIDAVLLDAP CSGFGVIRRK PEIKWTKTAG DVAEIAAIQR
410 420 430 440 450
RLLGAVAGLV KPGGTLVYST CTIESTENEE QVAVFLKEHP EFQLDAEWPE
460 470 480 490
EALAPLREKG IIDSSFDGQA QLLPHHYGSD GFFIARLRRR P
Length:491
Mass (Da):53,877
Last modified:September 1, 2009 - v1
Checksum:iD80853288FD5AAFD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001656 Genomic DNA. Translation: ACT02383.1.
RefSeqiWP_015845324.1. NC_012914.1.

Genome annotation databases

EnsemblBacteriaiACT02383; ACT02383; Pjdr2_3753.
KEGGipjd:Pjdr2_3753.
PATRICi22838033. VBIPaeSp118865_3734.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001656 Genomic DNA. Translation: ACT02383.1.
RefSeqiWP_015845324.1. NC_012914.1.

3D structure databases

ProteinModelPortaliC6D4F5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi324057.Pjdr2_3753.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACT02383; ACT02383; Pjdr2_3753.
KEGGipjd:Pjdr2_3753.
PATRICi22838033. VBIPaeSp118865_3734.

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiPOG091H02E2.

Enzyme and pathway databases

BioCyciPSP324057:GH5H-3842-MONOMER.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiC6D4F5_PAESJ
AccessioniPrimary (citable) accession number: C6D4F5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: September 7, 2016
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.