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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Pjdr2_4985

Organism
Paenibacillus sp. (strain JDR-2)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciPSP324057:GH5H-5088-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Pjdr2_4985Imported
OrganismiPaenibacillus sp. (strain JDR-2)Imported
Taxonomic identifieri324057 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
ProteomesiUP000002510 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi324057.Pjdr2_4985.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
KOiK01971.
OMAiKPLWPEA.
OrthoDBiEOG661H49.

Family and domain databases

InterProiIPR014145. LigD_pol_dom.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

C6D0J7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKTSASAKR PAMVMVEGQE ITVTNPEKPL WPEHGITKLM YLEKLAMLSP
60 70 80 90 100
FLLKHCKDRY LTTIRYPHGY AGKSFYQKNC PEPKPEFVHI SESEGISYIQ
110 120 130 140 150
LDNLPTLLWL GNLACLEFHA SFDRISNPDR PTEWILDLDP SREEEPRIIE
160 170 180 190 200
AAALVGKLLE SLKIKSVPKT SGATGVQIVV PLQQKYTFDE LRGLGQFVGD
210 220 230 240 250
YLSSAYPQLF TVERLTKNRG DLIYVDYLQH YRGKTISAPY TPRARYGAPV
260 270 280 290 300
STPLKWEEVY AGGIKPADFH LLNIGERLQR FGDLIDLEKP QDLGHVLSFI

HAKK
Length:304
Mass (Da):34,516
Last modified:September 1, 2009 - v1
Checksum:i30FCF998564124BE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001656 Genomic DNA. Translation: ACT03596.1.
RefSeqiWP_015846534.1. NC_012914.1.
YP_003013682.1. NC_012914.1.

Genome annotation databases

EnsemblBacteriaiACT03596; ACT03596; Pjdr2_4985.
KEGGipjd:Pjdr2_4985.
PATRICi22840459. VBIPaeSp118865_4931.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001656 Genomic DNA. Translation: ACT03596.1.
RefSeqiWP_015846534.1. NC_012914.1.
YP_003013682.1. NC_012914.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi324057.Pjdr2_4985.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACT03596; ACT03596; Pjdr2_4985.
KEGGipjd:Pjdr2_4985.
PATRICi22840459. VBIPaeSp118865_4931.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
KOiK01971.
OMAiKPLWPEA.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciPSP324057:GH5H-5088-MONOMER.

Family and domain databases

InterProiIPR014145. LigD_pol_dom.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JDR-2Imported.

Entry informationi

Entry nameiC6D0J7_PAESJ
AccessioniPrimary (citable) accession number: C6D0J7
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: April 29, 2015
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.